Basic Information

Insect: Eupithecia pulchellata
Gene Symbol: -
Assembly: GCA_963931895.1
Location: OZ007536.1:12513796-12517028[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.078 4.3e+02 1.7 0.1 26 51 179 204 157 207 0.82

2 13 0.3 1.6e+03 -0.1 0.4 21 33 202 214 193 226 0.71

3 13 0.27 1.5e+03 -0.0 0.0 22 52 259 289 233 291 0.82

4 13 0.0017 9.1 7.1 0.0 21 53 314 346 306 347 0.87

5 13 0.025 1.3e+02 3.3 0.1 21 52 342 373 340 374 0.86

6 13 0.00022 1.2 9.9 0.0 23 44 372 393 365 397 0.89

7 13 0.018 1e+02 3.8 0.4 26 46 403 423 395 430 0.89

8 13 0.41 2.2e+03 -0.6 0.0 22 46 427 451 423 459 0.80

9 13 0.31 1.7e+03 -0.2 0.1 21 31 454 464 450 481 0.80

10 13 0.0027 15 6.4 0.1 21 46 482 507 472 510 0.89

11 13 0.00085 4.7 8.0 0.0 21 46 510 535 506 537 0.91

12 13 0.0017 9.3 7.1 0.0 21 52 538 569 534 569 0.87

13 13 0.0014 7.7 7.3 0.0 21 48 566 593 564 600 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.078	4.3e+02	1.7	0.1	26	51	179	204	157	207	0.82
2	13	0.3	1.6e+03	-0.1	0.4	21	33	202	214	193	226	0.71
3	13	0.27	1.5e+03	-0.0	0.0	22	52	259	289	233	291	0.82
4	13	0.0017	9.1	7.1	0.0	21	53	314	346	306	347	0.87
5	13	0.025	1.3e+02	3.3	0.1	21	52	342	373	340	374	0.86
6	13	0.00022	1.2	9.9	0.0	23	44	372	393	365	397	0.89
7	13	0.018	1e+02	3.8	0.4	26	46	403	423	395	430	0.89
8	13	0.41	2.2e+03	-0.6	0.0	22	46	427	451	423	459	0.80
9	13	0.31	1.7e+03	-0.2	0.1	21	31	454	464	450	481	0.80
10	13	0.0027	15	6.4	0.1	21	46	482	507	472	510	0.89
11	13	0.00085	4.7	8.0	0.0	21	46	510	535	506	537	0.91
12	13	0.0017	9.3	7.1	0.0	21	52	538	569	534	569	0.87
13	13	0.0014	7.7	7.3	0.0	21	48	566	593	564	600	0.89

Sequence Information

Coding Sequence: ATGTACTATATTCAAAACAAATATCCTCAAGAAGTTTACCAGAGGTTTACTGGAAGTTTGGTTGTGCCCGGAGACAACAGGCCCAGCACAGTGTGCTACCTGTGTGACGCACAGTTAGTGAGATGCTGGAGGTTCTTTGACATGTGCCAGAAGTCAGACAAGATCTGCACAGATCTGTATCGGAACAACTCAGAGGTGTCACAGGAGAGTATAGCTAAGCAGAATCTGGGGATATACAACTTGTCCACAACACCAGTTACATTAGTAACTTATATAGAAGAAACTGAAATCACTGTTAAAGAAGAAGACACTTCAGATGATGAAGTGCTGATGCCCATGTTCGTTGAAGAAATCAAAAATGAATGCAATTTGGTTCATAGTGATGAAACTATTGATGATAAATCTATGACAACAACCATACAGGAGAACTCAAATGGAAATTGCAATGAAAAAGACAGTAATAGTAGAAAAAGatacaaaacaaaatctaaaataaaacaagaaaccCGTAGAGGCAAAGTAGCTACAATATTTAAGTGTGATGTTTGTCAAAAGCCATTTACAAAGAGTTCATACTTGAAAAGGCACATGAGAGTACACACTGAGGAAAAGCCATATTCTtgcaaaatatgcaaaaagactTACACTTGTAAAGATTCATTAAAAACTCATATGGTTGGACATACCACTGAGATGCCCACCTGTGATGCCTGTGGCAAAAGTTTTGCTACAAAAACTGTTCTCAATAGACACATTATGCAAGTACACTCCGGACAGAAGCCAATGGAATGTAAAGTTTGCAATAAATCATTTCCTGTCAAGGATAGTCTACGGGCGCATATGAAAATTCACGTTGGATACAAGCCATTTGTCTGCAATGTCTGTGGAAAAACGTTTTTTGACAAAAGTCAATTGAAAGTACACAACAGAATACATTCTGGAGAAAAGCCATTCACATGTGACTTGTGCAACAAGTCCTTTACTCAAttaactatattaaaaagtcaTATGCATCTTCACACCGGAGAGAAGCCTTATGTTTGTAAAATATGCAATAAGTCATTTCGACATCGATCCACTTTGGCCTATCATTCGCAACTGCACACCGGTGGTAAGCCATACACATGCCCTATATGCAACAGTGTCTTCGATCTGAAGCCGCTATTACGCAAGCATATGGCGACCCACACAGACAATACCTCCCATGTTTGCAAAGTTTGTAACAAAGCATTCATCCAAAGTGTTTGTCTAAGGAAGCACATGAAAATTCACACCGAGGAGAGACAATATACGTGCAATGTATGCGGCAAATCCTTCTTCAGGAGCACTGGATTAAACAACCATATGAAAACACACACCGGAGAAAAACCATACACATGCAATATGTGCGGGAAATCATTCTCTCTTAACTCGACTTTGGTGAAACACAAGAGAATACACACGGGCGAGCGGCCCTACTCCTGCGACGTGTGCAGCAAGCGGTTCCGGCTCAGCGGCGCGCTGAGTAGGCACATCAAAATGCACACCGGAGAGAAGCCATTCACTTGCAACATTTGCAGCAAGTCATTCATCGGGAGCGGAGAATTGAAAAAGCATTTGAAAGTACACAGCGAAGAAAAGCCATACACTTGCTACACTTGTACGAAGTCTTTCAGAgataaaaagtccttaaaagtTCATATAAGATTGCACACTGGAGAGAAGCCGTACACATGCAGTGTCTGTGGTAAATCATTTACTCAGAGCAGTAGTCTGAGTATGCACATGAAGAGAGTCCACAGTGAAGACAAGCCTTACAGCTGCACTGTTTGTGGGAAATCCTTTTCAGTCAATTATATTTTGACCAAGCATATGAGAATTCACACTAAAGAGGAGCCACAGTAG
Protein Sequence: MYYIQNKYPQEVYQRFTGSLVVPGDNRPSTVCYLCDAQLVRCWRFFDMCQKSDKICTDLYRNNSEVSQESIAKQNLGIYNLSTTPVTLVTYIEETEITVKEEDTSDDEVLMPMFVEEIKNECNLVHSDETIDDKSMTTTIQENSNGNCNEKDSNSRKRYKTKSKIKQETRRGKVATIFKCDVCQKPFTKSSYLKRHMRVHTEEKPYSCKICKKTYTCKDSLKTHMVGHTTEMPTCDACGKSFATKTVLNRHIMQVHSGQKPMECKVCNKSFPVKDSLRAHMKIHVGYKPFVCNVCGKTFFDKSQLKVHNRIHSGEKPFTCDLCNKSFTQLTILKSHMHLHTGEKPYVCKICNKSFRHRSTLAYHSQLHTGGKPYTCPICNSVFDLKPLLRKHMATHTDNTSHVCKVCNKAFIQSVCLRKHMKIHTEERQYTCNVCGKSFFRSTGLNNHMKTHTGEKPYTCNMCGKSFSLNSTLVKHKRIHTGERPYSCDVCSKRFRLSGALSRHIKMHTGEKPFTCNICSKSFIGSGELKKHLKVHSEEKPYTCYTCTKSFRDKKSLKVHIRLHTGEKPYTCSVCGKSFTQSSSLSMHMKRVHSEDKPYSCTVCGKSFSVNYILTKHMRIHTKEEPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00705647;
90% Identity: iTF_00696641;
80% Identity: iTF_00702196;