Epul021651.1
Basic Information
- Insect
- Eupithecia pulchellata
- Gene Symbol
- PRDM7_2
- Assembly
- GCA_963931895.1
- Location
- OZ007544.1:6072914-6083446[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00014 0.79 10.5 0.2 22 46 374 398 365 406 0.85 2 11 0.3 1.7e+03 -0.2 0.0 26 47 406 427 399 433 0.78 3 11 0.025 1.4e+02 3.3 0.1 22 47 430 455 421 462 0.82 4 11 0.41 2.2e+03 -0.6 0.0 21 44 457 480 453 484 0.83 5 11 4.4e-05 0.24 12.2 0.0 21 49 485 513 467 516 0.82 6 11 0.012 65 4.4 0.0 21 46 513 538 511 541 0.91 7 11 0.015 85 4.0 0.0 22 46 542 566 539 572 0.86 8 11 0.0041 22 5.8 0.0 21 52 569 600 565 601 0.87 9 11 0.017 92 3.9 0.0 21 45 597 621 593 625 0.91 10 11 0.00061 3.3 8.5 0.0 21 46 625 650 621 652 0.91 11 11 0.00058 3.2 8.6 0.1 21 47 653 679 650 685 0.88
Sequence Information
- Coding Sequence
- ATGAATTTGCGGCAGAAACCGCCTATCAGCTATTACGAACCAATTGAACCGAACTTGGACGAAtatatttATTGCGATAAATGCTGTGACCATGTTTATGAATATTGCTCCATCCATGGACCGTTACTCGTCATTCCAGAtgataagGTGCCGGCCAGGCCTAAGGTTCCATTGTTCGTGCCTCGCGCCGCGCTGACTGTGCCGAAAGTGTTTCTTCACATCGCGCCTTCCTATATACCAGGCGCCGGCCTTGGTGTGTTTTCAACTCTGACACTGCCGAGCGGAGTGCGATTCGGTCCATACACCGGCGTTCGCAGCGACGGTGTTGGGTCCAACTATTGCTGGCAGATATATGACGACAACCGCAAGCCAGCGTTCTGCATAGACGCCGCTGATGCGAACAAGTCAAACTGGATGCGCTATGTGAACTGTGCTAGGCATTGGAGCGAACAGAATCTAGTGGCCTTCCAGTACAGAGGGGAATTGTACTACAGAACTATAAGGATTATCCCCCGTTTCACGGAGCTGCTTGTGTTCTACGGCAGTGAGTTCGCTAACGAACTGGACATTCACATCGGACAGTATAACGTCAAGAGATACGCTATACACGATAAAACTAAGAGAAGAAAGCTAAACGACCCAAAACCACTACCAATAGAAGATAAGGTCATCAAATCCAATGAAACTAACATTccccaaaataaaatacagttgGAAATAACTGATGAACATGATCTTATTGGTACTGAAAATGCTTTGATAAAACCGACAGATGAAACAAGAAATAATCAAGACAAGGCCAAGATTCCCCAAAAGAAAATACAGTTGGAAATAACAGATGGAAATGATCTTATTGGTACTGAAAAAGCTTTGATAAATCCGACGCAAAATATAGATACTATTAGAAACAATAAAGATAAGGATAGTAAGTCAGCTGATCGCTCATACAAAGATGTTTATTACTACTGTGATATATGCAAGAAAcgattccttaaaataaatgatttggaGAAACACATGAGATTTCATGATGTGAAACGGGTGCACCAGTGTGAAATTTgcaattataggtacctatcgtTACATCTTTTAAAACGACATCGTGAAACGCATTATGGGGAAAACCGATTTCCTTGCGAAATTTGCAACGCCGAGTTTTCACAAATGAGCAATTTAAAAAGACATTTAAGGATTCACACTGGAGAAAAGCTTTATGCCTGCGACAATTGTGACGCAAAATTTGCAGAAATGAGCAGTTTAAAAAGACATTTGAGGACTCACACTGGACAAAAGCCTTATGCCTGCGACACTTGTGACGCTAAATTTTCAGATATAACCAGTTTAAAAAGACATTTGAGGACTCACACTGGAGAAAAGCCTTATGCCTGCGATACTTGTGACGCCAAATTTGCACACCTGGGCAGTTTAAAGGAACATTTAAGGACTCACACTGGGGAAAGGCCTTATGCCTGCGACAATTGTGACGCCAAATTTGCACAAATGAGCAATTTAAAAAGACATTTAAGGATTCACACTGGAGAAAAGCCTTATGCCTGCGACACTTGTGACGCTAAATTTTCAGATATAACCAGTTTAAAAAGACATTTGAGGATTCACACTGGAGAAAATCCTTATGCCTGCGACACTTGTGACGCTAAATTTTCAGATATAACCAGTTTAAAAAGACATTTGAGGACTCACACTGGAGAAAAGCCTTATGCCTGCGACACTTGTGACGCTAAATTTTCAGATATAACCAGTTTAAAAAGACATTTGAGGATTCACACTGGAGAAAAGCCTTATGCCTGCGACACTTGTGACGCTAAATTTTCAGATATAACCAGTTTAAAAAGACATTTGAGGACTCACACTGGAGAAAAGCCTTATGCCTGCGACACTTGTGACGCCAAATTTACACAAATGAGCCATTTAAAAAGACATTTGAAGATTCACACTGGAGAAAAACCTTATGCCTGCGATACTTGTGACGCTAAATTTACACAAATAAACAGTTTAAAAAGACATTTGAGGATTCACCCTATAAAAAAAGCCGTACTGTAA
- Protein Sequence
- MNLRQKPPISYYEPIEPNLDEYIYCDKCCDHVYEYCSIHGPLLVIPDDKVPARPKVPLFVPRAALTVPKVFLHIAPSYIPGAGLGVFSTLTLPSGVRFGPYTGVRSDGVGSNYCWQIYDDNRKPAFCIDAADANKSNWMRYVNCARHWSEQNLVAFQYRGELYYRTIRIIPRFTELLVFYGSEFANELDIHIGQYNVKRYAIHDKTKRRKLNDPKPLPIEDKVIKSNETNIPQNKIQLEITDEHDLIGTENALIKPTDETRNNQDKAKIPQKKIQLEITDGNDLIGTEKALINPTQNIDTIRNNKDKDSKSADRSYKDVYYYCDICKKRFLKINDLEKHMRFHDVKRVHQCEICNYRYLSLHLLKRHRETHYGENRFPCEICNAEFSQMSNLKRHLRIHTGEKLYACDNCDAKFAEMSSLKRHLRTHTGQKPYACDTCDAKFSDITSLKRHLRTHTGEKPYACDTCDAKFAHLGSLKEHLRTHTGERPYACDNCDAKFAQMSNLKRHLRIHTGEKPYACDTCDAKFSDITSLKRHLRIHTGENPYACDTCDAKFSDITSLKRHLRTHTGEKPYACDTCDAKFSDITSLKRHLRIHTGEKPYACDTCDAKFSDITSLKRHLRTHTGEKPYACDTCDAKFTQMSHLKRHLKIHTGEKPYACDTCDAKFTQINSLKRHLRIHPIKKAVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702209;
- 90% Identity
- iTF_00702209;
- 80% Identity
- iTF_00702209;