Epul021651.1
Basic Information
- Insect
- Eupithecia pulchellata
- Gene Symbol
- PRDM7
- Assembly
- GCA_963931895.1
- Location
- OZ007544.1:6072914-6083446[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0011 0.08 14.0 2.1 1 23 321 343 321 343 0.98 2 13 0.032 2.3 9.5 4.9 1 23 349 371 349 371 0.98 3 13 6.9e-07 4.9e-05 24.1 0.3 1 23 377 399 377 399 0.98 4 13 1.8e-05 0.0013 19.7 0.4 1 23 405 427 405 427 0.98 5 13 7.3e-06 0.00052 20.9 0.6 1 23 433 455 433 455 0.98 6 13 3e-05 0.0021 19.0 0.6 1 23 461 483 461 483 0.98 7 13 2.2e-06 0.00016 22.5 0.3 1 23 489 511 489 511 0.98 8 13 1.7e-05 0.0012 19.8 0.3 1 23 517 539 517 539 0.98 9 13 7.3e-06 0.00052 20.9 0.6 1 23 545 567 545 567 0.98 10 13 1.7e-05 0.0012 19.8 0.3 1 23 573 595 573 595 0.98 11 13 7.3e-06 0.00052 20.9 0.6 1 23 601 623 601 623 0.98 12 13 8.5e-06 0.0006 20.7 2.1 1 23 629 651 629 651 0.98 13 13 2e-05 0.0014 19.6 0.5 1 23 657 679 657 679 0.98
Sequence Information
- Coding Sequence
- ATGAATTTGCGGCAGAAACCGCCTATCAGCTATTACGAACCAATTGAACCGAACTTGGACGAAtatatttATTGCGATAAATGCTGTGACCATGTTTATGAATATTGCTCCATCCATGGACCGTTACTCGTCATTCCAGAtgataagGTGCCGGCCAGGCCTAAGGTTCCATTGTTCGTGCCTCGCGCCGCGCTGACTGTGCCGAAAGTGTTTCTTCACATCGCGCCTTCCTATATACCAGGCGCCGGCCTTGGTGTGTTTTCAACTCTGACACTGCCGAGCGGAGTGCGATTCGGTCCATACACCGGCGTTCGCAGCGACGGTGTTGGGTCCAACTATTGCTGGCAGATATATGACGACAACCGCAAGCCAGCGTTCTGCATAGACGCCGCTGATGCGAACAAGTCAAACTGGATGCGCTATGTGAACTGTGCTAGGCATTGGAGCGAACAGAATCTAGTGGCCTTCCAGTACAGAGGGGAATTGTACTACAGAACTATAAGGATTATCCCCCGTTTCACGGAGCTGCTTGTGTTCTACGGCAGTGAGTTCGCTAACGAACTGGACATTCACATCGGACAGTATAACGTCAAGAGATACGCTATACACGATAAAACTAAGAGAAGAAAGCTAAACGACCCAAAACCACTACCAATAGAAGATAAGGTCATCAAATCCAATGAAACTAACATTccccaaaataaaatacagttgGAAATAACTGATGAACATGATCTTATTGGTACTGAAAATGCTTTGATAAAACCGACAGATGAAACAAGAAATAATCAAGACAAGGCCAAGATTCCCCAAAAGAAAATACAGTTGGAAATAACAGATGGAAATGATCTTATTGGTACTGAAAAAGCTTTGATAAATCCGACGCAAAATATAGATACTATTAGAAACAATAAAGATAAGGATAGTAAGTCAGCTGATCGCTCATACAAAGATGTTTATTACTACTGTGATATATGCAAGAAAcgattccttaaaataaatgatttggaGAAACACATGAGATTTCATGATGTGAAACGGGTGCACCAGTGTGAAATTTgcaattataggtacctatcgtTACATCTTTTAAAACGACATCGTGAAACGCATTATGGGGAAAACCGATTTCCTTGCGAAATTTGCAACGCCGAGTTTTCACAAATGAGCAATTTAAAAAGACATTTAAGGATTCACACTGGAGAAAAGCTTTATGCCTGCGACAATTGTGACGCAAAATTTGCAGAAATGAGCAGTTTAAAAAGACATTTGAGGACTCACACTGGACAAAAGCCTTATGCCTGCGACACTTGTGACGCTAAATTTTCAGATATAACCAGTTTAAAAAGACATTTGAGGACTCACACTGGAGAAAAGCCTTATGCCTGCGATACTTGTGACGCCAAATTTGCACACCTGGGCAGTTTAAAGGAACATTTAAGGACTCACACTGGGGAAAGGCCTTATGCCTGCGACAATTGTGACGCCAAATTTGCACAAATGAGCAATTTAAAAAGACATTTAAGGATTCACACTGGAGAAAAGCCTTATGCCTGCGACACTTGTGACGCTAAATTTTCAGATATAACCAGTTTAAAAAGACATTTGAGGATTCACACTGGAGAAAATCCTTATGCCTGCGACACTTGTGACGCTAAATTTTCAGATATAACCAGTTTAAAAAGACATTTGAGGACTCACACTGGAGAAAAGCCTTATGCCTGCGACACTTGTGACGCTAAATTTTCAGATATAACCAGTTTAAAAAGACATTTGAGGATTCACACTGGAGAAAAGCCTTATGCCTGCGACACTTGTGACGCTAAATTTTCAGATATAACCAGTTTAAAAAGACATTTGAGGACTCACACTGGAGAAAAGCCTTATGCCTGCGACACTTGTGACGCCAAATTTACACAAATGAGCCATTTAAAAAGACATTTGAAGATTCACACTGGAGAAAAACCTTATGCCTGCGATACTTGTGACGCTAAATTTACACAAATAAACAGTTTAAAAAGACATTTGAGGATTCACCCTATAAAAAAAGCCGTACTGTAA
- Protein Sequence
- MNLRQKPPISYYEPIEPNLDEYIYCDKCCDHVYEYCSIHGPLLVIPDDKVPARPKVPLFVPRAALTVPKVFLHIAPSYIPGAGLGVFSTLTLPSGVRFGPYTGVRSDGVGSNYCWQIYDDNRKPAFCIDAADANKSNWMRYVNCARHWSEQNLVAFQYRGELYYRTIRIIPRFTELLVFYGSEFANELDIHIGQYNVKRYAIHDKTKRRKLNDPKPLPIEDKVIKSNETNIPQNKIQLEITDEHDLIGTENALIKPTDETRNNQDKAKIPQKKIQLEITDGNDLIGTEKALINPTQNIDTIRNNKDKDSKSADRSYKDVYYYCDICKKRFLKINDLEKHMRFHDVKRVHQCEICNYRYLSLHLLKRHRETHYGENRFPCEICNAEFSQMSNLKRHLRIHTGEKLYACDNCDAKFAEMSSLKRHLRTHTGQKPYACDTCDAKFSDITSLKRHLRTHTGEKPYACDTCDAKFAHLGSLKEHLRTHTGERPYACDNCDAKFAQMSNLKRHLRIHTGEKPYACDTCDAKFSDITSLKRHLRIHTGENPYACDTCDAKFSDITSLKRHLRTHTGEKPYACDTCDAKFSDITSLKRHLRIHTGEKPYACDTCDAKFSDITSLKRHLRTHTGEKPYACDTCDAKFTQMSHLKRHLKIHTGEKPYACDTCDAKFTQINSLKRHLRIHPIKKAVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702551;
- 90% Identity
- iTF_00702551;
- 80% Identity
- iTF_00702551;