Basic Information

Insect: Eupithecia pulchellata
Gene Symbol: -
Assembly: GCA_963931895.1
Location: OZ007550.1:3538881-3541234[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.6 1.1e+02 4.1 0.4 2 23 2 24 1 24 0.92

2 18 0.2 14 7.0 0.1 2 23 49 71 48 71 0.96

3 18 1.5 1.1e+02 4.2 2.0 2 23 94 115 93 115 0.92

4 18 4.9e-08 3.5e-06 27.7 1.0 1 23 119 142 119 142 0.98

5 18 0.048 3.4 8.9 2.9 1 21 148 168 148 169 0.95

6 18 0.8 57 5.0 0.1 1 12 176 187 176 199 0.87

7 18 0.00083 0.059 14.4 0.6 1 23 206 229 206 229 0.95

8 18 0.00027 0.019 16.0 1.3 1 23 234 256 234 256 0.97

9 18 0.013 0.9 10.7 0.1 2 20 300 318 299 320 0.94

10 18 0.059 4.2 8.6 0.1 2 23 350 372 349 372 0.89

11 18 0.0021 0.15 13.2 1.4 1 23 394 416 394 416 0.97

12 18 0.013 0.89 10.7 0.0 1 23 420 443 420 443 0.96

13 18 0.15 11 7.3 0.3 2 20 449 467 448 469 0.92

14 18 1.5 1.1e+02 4.2 1.8 1 23 476 499 476 499 0.89

15 18 7.9e-05 0.0057 17.6 1.5 1 23 506 529 506 529 0.97

16 18 0.0002 0.014 16.4 1.9 1 23 533 555 533 555 0.98

17 18 0.00051 0.036 15.1 0.7 1 19 561 579 561 583 0.96

18 18 0.0024 0.17 13.0 1.0 1 23 589 612 589 612 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.6	1.1e+02	4.1	0.4	2	23	2	24	1	24	0.92
2	18	0.2	14	7.0	0.1	2	23	49	71	48	71	0.96
3	18	1.5	1.1e+02	4.2	2.0	2	23	94	115	93	115	0.92
4	18	4.9e-08	3.5e-06	27.7	1.0	1	23	119	142	119	142	0.98
5	18	0.048	3.4	8.9	2.9	1	21	148	168	148	169	0.95
6	18	0.8	57	5.0	0.1	1	12	176	187	176	199	0.87
7	18	0.00083	0.059	14.4	0.6	1	23	206	229	206	229	0.95
8	18	0.00027	0.019	16.0	1.3	1	23	234	256	234	256	0.97
9	18	0.013	0.9	10.7	0.1	2	20	300	318	299	320	0.94
10	18	0.059	4.2	8.6	0.1	2	23	350	372	349	372	0.89
11	18	0.0021	0.15	13.2	1.4	1	23	394	416	394	416	0.97
12	18	0.013	0.89	10.7	0.0	1	23	420	443	420	443	0.96
13	18	0.15	11	7.3	0.3	2	20	449	467	448	469	0.92
14	18	1.5	1.1e+02	4.2	1.8	1	23	476	499	476	499	0.89
15	18	7.9e-05	0.0057	17.6	1.5	1	23	506	529	506	529	0.97
16	18	0.0002	0.014	16.4	1.9	1	23	533	555	533	555	0.98
17	18	0.00051	0.036	15.1	0.7	1	19	561	579	561	583	0.96
18	18	0.0024	0.17	13.0	1.0	1	23	589	612	589	612	0.96

Sequence Information

Coding Sequence: ATGGTCTGTGTGTTCTGCTGTGAGAGTTACGAGGATTCGCCGTTGTTCAGAAACCATATGGATATAGAGCACGAAACGTTCTCTATCCCCTTAGCGTTCGCGCATTGCTCAGAAGGTTTCATAAAGGCCGACTGCACCGATATTCGGTGCCGTATCTGCAGCGAACCTTGTGCCAATCTAGACGATGCAGCTgtacatttaaaaaaagttcACCAAAAACCTATCGATATATCCGCTCAGTTAGGAATACAGCCGTTTGTTTTCACACCCAATTCATTGAAATGCGCGCTTTGCGAGTCGAAGGCATACAGTCTCCGGCACTTAAGTAGGCATACGCAGTCTCACTTCCTAAGATTCACTTGCGAGTCCTGTGGGAAGTCTTTCTCCACTAACTCTACTCTCCAAGTCCATATCAGAAGCTCACACtacaaaattaaagaatatcAGTGTTTCAAATGCAAATCTTGCTTCAGTACTGCTGAGGAAAAGAGAAATCATTTGAACGAGTCATCTAAATGTCGAAAATACCTGTGCAATGTATGTGGTGAACGTTTTGTGTCTGGATTTATAAAAGAAATGCACATGACGAATGTCCACGGAGTTGCACGGAAGCCTCACGTTTGTCCCGAGTGCGAGTTAGTATTCAcagataaaaaagtttttgtgagACATTTCAAGATTGCGCACACTGATGACAATTTTGTTTGCTCCTTCTGCGGTCAGAAATTTGTTTCCAAAAAAGATTTCGAGGAGCACAAAGTTACGCATACGAACGAGAAGCCTTACCATTGTACAGAATGGGCTATCGCTCCAGGTACCTCCATCCGTCGTCGAAATGCAAATCTAATTGTGCGCCACGCGACGGCATATCCGTTCAGACTACCGAACACTTTAATGACATGCTTTGAATGCTTAGAAAGTTTTAATGAACCGGAAGAGTTTAGAAAACATATGGACGTTGAGTTTAACGATATGAGAAAGCGCAGGCGTACTCTCACCAGCAGGGTACAAGCCCAATACGACATCAAAGTAGATATAACTGAGCTCAAATGTAGAATATGTCACGAACCCTTCGACTCTCTTGAAGACATAGCTGCCCATTTATACGCCGTACATCGCGTTGGTATTGATTTAAACCAGAAATTAGGATTGCAACCATTCAAATTGTATAGGAACAATTATTCTTGTTTAATCTGTAACGAAAAATTTCATGATCTGCGTGCGTTAAGTAGACACACACAAGctcattatttaaatttcatgTGCGAGGCTTGCGGTAAAGCTTATGGAAACGAGGCAAGTGTCAGAGCGCACGCTAGAAACTCTCACGGGGAGCACAAAACATACTGTTTGAAATGTAGAAAAGGCTTCAACTCCAGCGAGGAGAAAAAGATGCACATACTAGGATCTGAACGCTGTTGGCCATATGTTTGCAACTTTTGTGGTATACGATGTCTCTCcaaagtaacaaaaaataatcatatgaCCGAGGAACATGGTTACAAACCACCTCTTTATTCCTGCCCTGAATGCAATATGCTATTCACTTCCAAGTCGAATCAAAATAGACATTTCAACACAGAACACACGGATAAATACAAATGTGCTCATTGTGAAAGAAAATTTAGCGGCAAAAAGGATCTAATAGACCATACAGTTACACATACTGCTGAAAAGCTGTACACCTGTGATGTTTGTTTCAAAGGTTTCTCTAGACTGAAAACGCTGAAAGCCCATGCGTGGAATCATATGGAGAAGAAACGTTTCGAGTGCAAGCCATGTAACAAGCAGTTTAACCAGCGTGTTAGTTGGAGAACTCACATGGCTTCATACCATCCACAACAGAGTCcataa
Protein Sequence: MVCVFCCESYEDSPLFRNHMDIEHETFSIPLAFAHCSEGFIKADCTDIRCRICSEPCANLDDAAVHLKKVHQKPIDISAQLGIQPFVFTPNSLKCALCESKAYSLRHLSRHTQSHFLRFTCESCGKSFSTNSTLQVHIRSSHYKIKEYQCFKCKSCFSTAEEKRNHLNESSKCRKYLCNVCGERFVSGFIKEMHMTNVHGVARKPHVCPECELVFTDKKVFVRHFKIAHTDDNFVCSFCGQKFVSKKDFEEHKVTHTNEKPYHCTEWAIAPGTSIRRRNANLIVRHATAYPFRLPNTLMTCFECLESFNEPEEFRKHMDVEFNDMRKRRRTLTSRVQAQYDIKVDITELKCRICHEPFDSLEDIAAHLYAVHRVGIDLNQKLGLQPFKLYRNNYSCLICNEKFHDLRALSRHTQAHYLNFMCEACGKAYGNEASVRAHARNSHGEHKTYCLKCRKGFNSSEEKKMHILGSERCWPYVCNFCGIRCLSKVTKNNHMTEEHGYKPPLYSCPECNMLFTSKSNQNRHFNTEHTDKYKCAHCERKFSGKKDLIDHTVTHTAEKLYTCDVCFKGFSRLKTLKAHAWNHMEKKRFECKPCNKQFNQRVSWRTHMASYHPQQSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00705319; iTF_00697624; iTF_00699454;
90% Identity: -
80% Identity: -