Basic Information

Insect: Eupithecia inturbata
Gene Symbol: -
Assembly: GCA_963662085.1
Location: OY759201.1:1365513-1368537[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00041 5.8 7.8 0.0 26 40 44 58 36 64 0.87

2 10 0.033 4.7e+02 1.6 0.0 18 52 228 262 221 263 0.85

3 10 0.025 3.6e+02 2.0 0.1 21 44 259 282 251 290 0.84

4 10 0.0025 35 5.3 0.0 21 45 315 339 301 344 0.80

5 10 0.034 4.8e+02 1.6 0.2 21 43 427 449 420 454 0.85

6 10 0.00076 11 6.9 0.1 21 46 515 540 507 546 0.85

7 10 0.021 2.9e+02 2.3 0.0 21 46 543 568 539 574 0.84

8 10 0.0021 29 5.5 0.0 20 45 570 595 560 606 0.86

9 10 0.1 1.5e+03 0.1 0.2 22 34 600 612 596 626 0.69

10 10 0.0018 26 5.7 0.1 21 43 627 649 619 654 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00041	5.8	7.8	0.0	26	40	44	58	36	64	0.87
2	10	0.033	4.7e+02	1.6	0.0	18	52	228	262	221	263	0.85
3	10	0.025	3.6e+02	2.0	0.1	21	44	259	282	251	290	0.84
4	10	0.0025	35	5.3	0.0	21	45	315	339	301	344	0.80
5	10	0.034	4.8e+02	1.6	0.2	21	43	427	449	420	454	0.85
6	10	0.00076	11	6.9	0.1	21	46	515	540	507	546	0.85
7	10	0.021	2.9e+02	2.3	0.0	21	46	543	568	539	574	0.84
8	10	0.0021	29	5.5	0.0	20	45	570	595	560	606	0.86
9	10	0.1	1.5e+03	0.1	0.2	22	34	600	612	596	626	0.69
10	10	0.0018	26	5.7	0.1	21	43	627	649	619	654	0.88

Sequence Information

Coding Sequence: ATGTCTGTTTGCAGAATGTGTTTACTTGGCAGTGTTCCACTGAAACCCATTATTAACTCACGACTACAAGAATTGTTCGAATTGCTTTCAAACAACAAGTTGAACACAGAAGATCACAGACCTGAATCATTATGCTACATTTGCTACGCCCTGCTGAGGAGAAGCCATAAGTTGATGATTGTCTCCAGGAAGGCTGAACATATACTTACTAAACTCTACTGTAATGGCTTGACAGTCACTCCAGCAGCAGTAACATTACTGAATGGAGGCCTTCCCCTCATCACTGCAGCGGCTGCCATACAACCCGTTACAATCCACCAATACCCTAGTGATACTGAGGAAAACTGTCAGGTCAAACAGGAGCCAGATTATGATGATAGCAATGCTGTTGAATGGTTCCTTGAGGAAGTTAAAAATGATTTTGATGAAGaCACTGCAACTGTGATTAAAGACGAACATAAACAAACCCATGAAGAAAACCAAATATTCATTGAACCTTACAGTCTGAAAGAGGAGGCAACCAACCTACCcattaaaaaaatcaagacAAAAGCCCCTGTGAAATCTAAGGTGAAGAAACTTAATATTCACCATGGagaaaaatcatttaaatgCAGTGTTTGTGGAGAAACTTTCAGCCAAATGTATCGCCTCAAATTACATAAACGGCAACATTTACGCAAATCTAGAGTATCTCACCCACTGGCCTGCACATTCTGTGATAAAATCGTAGTGGATAAATATGAACTGGAAAAACATGTCTTATTGCATGAGGGAGAAAAACCATATTCCTGCACAATATGCAGCAAGACATATTCTAGCAAATATGTCCTAAAACGACATCACAAGACTCATTCAGGACAACGCCCATATCTTTGTGGCGCGTGCGGTAAATCTTTCGCAGAGAAAGGCGACCTTAAAAAACACATGAGGATCCATTCCGGAGAAAAACCATTTACTTGCAAAATATGTCTAAAACAGTTTAccgaaaactataaattaaaatcacacATGAGCATCCATGAGGGCAAAGAGTTTATATGCAAAATGTGTGATAAACCCTTTCCTGAGAGGCATCAATTGAAACGGCATGTTAGTAGAATGCATGCTAACAATAAGCGATATGCCTGTGAATATTGCGATAAgaaattttatgaaaacaacCAACTGCTGAGTCATATAAAAATTCACACGGGAGATAAACCTTATTCTTGTGACGCCTGTAAAAAAACCTTCAACGACAAACGCCGTTTAATCGTACATTTCAGATATCACAGTGGCGAAAGGCCGTACAGCTGCAAAATATGTGATAAAAGATTTGTCTCCAGCACTATCTTAAGAAATCATAATCAAACACACACAGATAGGAAGCTTTTTGCCTGTGATAGTTGTGAGAAGACCTTTACCGTTCtaggctatttaaaaagtcatttaaaaaaacatacagatagAAGAAAAGAAGGATCTGCGTGCGCTTGCGACCGTTGCGGGAAAACGTTTTTCGACGCGAGCGTTCTGAAAAAACACATgaaaattcacacaggagaaaGGCCTTACGCCTGTGATTTGTGCCATAAAACTTTCATAGAGAAGAGTAACTTAAAACGTCATATCCGAACGCACACGGAAGAGAAACCTTTCCATTGTGATTTGTGTGGTAAGTCATTTGCTGATAGCGGGAATTTGAAGACTCATAGACGGGTTCACACTGGAGAAAAGCCATTTTCTTGCGATGCCTGTGGAAAAGGCTTCGCGCAGTCGACGTCATTGAAGAAACATCTAACAACGCACACTGGAGAACGTCAATTTTCCTGTCCCATATGCAACAAAGCTTTCTCAGCTAAGAACAGTGTGAAAAtacatatgagaattcacagCGGAGAAAAGCCATACACTTGCAATGTTTGCAGTAAATCTTTCTATGAGAGTAGCTCGCTAAGTAGGCATAAGAGAACACATGGGGGAGAAACCCCGTATATGTGTCTAATGTGTGAAAAAACGTTTAGTAGGAAATCATATTTGCAGCAGCATGTTGCGTTTTGCAAACGTTAG
Protein Sequence: MSVCRMCLLGSVPLKPIINSRLQELFELLSNNKLNTEDHRPESLCYICYALLRRSHKLMIVSRKAEHILTKLYCNGLTVTPAAVTLLNGGLPLITAAAAIQPVTIHQYPSDTEENCQVKQEPDYDDSNAVEWFLEEVKNDFDEDTATVIKDEHKQTHEENQIFIEPYSLKEEATNLPIKKIKTKAPVKSKVKKLNIHHGEKSFKCSVCGETFSQMYRLKLHKRQHLRKSRVSHPLACTFCDKIVVDKYELEKHVLLHEGEKPYSCTICSKTYSSKYVLKRHHKTHSGQRPYLCGACGKSFAEKGDLKKHMRIHSGEKPFTCKICLKQFTENYKLKSHMSIHEGKEFICKMCDKPFPERHQLKRHVSRMHANNKRYACEYCDKKFYENNQLLSHIKIHTGDKPYSCDACKKTFNDKRRLIVHFRYHSGERPYSCKICDKRFVSSTILRNHNQTHTDRKLFACDSCEKTFTVLGYLKSHLKKHTDRRKEGSACACDRCGKTFFDASVLKKHMKIHTGERPYACDLCHKTFIEKSNLKRHIRTHTEEKPFHCDLCGKSFADSGNLKTHRRVHTGEKPFSCDACGKGFAQSTSLKKHLTTHTGERQFSCPICNKAFSAKNSVKIHMRIHSGEKPYTCNVCSKSFYESSSLSRHKRTHGGETPYMCLMCEKTFSRKSYLQQHVAFCKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00700663;
90% Identity: iTF_00704607;
80% Identity: iTF_00701279;