Eexi017674.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352243.1:11752325-11767406[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.001 11 6.5 0.1 23 44 209 230 203 237 0.87 2 18 0.27 2.9e+03 -1.2 0.1 26 46 240 260 236 266 0.86 3 18 0.14 1.5e+03 -0.4 0.0 26 52 268 294 263 296 0.88 4 18 1.6e-08 0.00018 21.8 0.1 19 46 317 344 302 347 0.87 5 18 0.00011 1.2 9.6 0.0 21 47 347 373 345 379 0.86 6 18 0.17 1.8e+03 -0.6 0.0 22 43 376 397 372 399 0.86 7 18 0.00035 3.9 8.0 0.2 23 44 540 561 534 567 0.89 8 18 0.16 1.7e+03 -0.5 0.1 26 46 571 591 563 597 0.86 9 18 0.14 1.5e+03 -0.4 0.0 26 52 599 625 594 627 0.88 10 18 5.4e-09 5.8e-05 23.4 0.0 19 52 648 681 633 682 0.85 11 18 0.0081 88 3.6 0.1 21 47 678 704 676 709 0.77 12 18 0.0061 66 4.0 0.1 21 43 706 728 703 733 0.86 13 18 0.00034 3.7 8.0 0.3 18 34 731 747 728 760 0.80 14 18 0.29 3.2e+03 -1.4 0.1 26 44 767 785 763 795 0.83 15 18 0.55 6e+03 -2.3 0.1 25 46 794 815 782 822 0.81 16 18 0.64 6.9e+03 -2.5 0.0 21 44 818 841 814 850 0.71 17 18 0.44 4.8e+03 -1.9 0.0 21 35 846 860 829 873 0.78 18 18 0.00036 3.9 7.9 0.0 21 51 874 904 870 905 0.87
Sequence Information
- Coding Sequence
- ATGCCGTCCTCAGTCTGTAGAATTTGTTTATGTAGTGATTTGAAAATGTACTACATAGAAAACAATAAAAAATATTCACAAGAAGACTATCAGAGGTTTACTGGAACTTTGCTCGTCTCAGGAGATAACAGACCCAGAACAGTGTGCTACATGTGCGATGCACAGTTAGTTAGATGCTGGAGGTTCTTCGACATGTGCCAGAAGGCGGAGAAAATCTGCACAGACCTGTATCAGAACGATGTGGAGGTGACACAAGATAGTTTAACTCGGCACAACCTGGGATGGATATACAACTTGTCCACAGCACCAGTCAAATTGGTGGCTGACATCAAAGAGATTGAAATCACTGTTAAAGAAGAAATCACTGCGAAAGAAGAAGACACTTCTGATCATGAACACCGGGTGCCCGTGTGCGCTCAACAAATCAAAAGTGATGGCAATTGCAATGTGCCTGCAATTAAGGAAAGTAATGAGGCTGACACTGCACCTACACGCGTAGGAAATCGTAATGAGGCTGACACTGCACCTACACGCATAGGAAATCCTAATAAAAAGGGCATTCGTGTTGAAACTAAAATCAAAATAAAACAAGAAATTGTACTCAATAGACAAATACGATTGCGAAAGCCATATACATGTCCTATATGTGACACTGCCTTCGATACGAAACCTCTTTTACGCAAACACATGGCAACCCACACTGACAACACCTCCCGTGTttgcaaagtatgtaacaaagcatttatctatagtgtttgtctaaggaagcacgtgaaaattcacacagaggggagacaatatacttgcaatgtgtgtggcaaatcctactgtatgaagcaaggcttaaagaatcacatgaatatacacaccggagcaaagccgtacacatgcagtgtgtgtgaaaaatcattctctggtccttcaactttaataaaacacaagacaatacacactggtgagagaccatactcctgtgacgtatgctataaaaaattcaggcaaagtggtgatttgaggagacacatgaaattgcatactggagaacagccatttacctgcaacatttgcaacaagtcatttatcaagagttacatattaaaaaatcatttgaaaacacacactggaaaaaagccctataattgcgaagtttgcaataagtctttcaggaatagcaccactttggcattccacactCTTGTCTCAGGAGACAAGAGACCCCGCACAGTGTGCTACATGTGCAATGCACAGTTAGTAAGATGCTTGAAGTTCTTCGACATGTGCCAGACGTCGGAGAAAATCTGCACAGACCTGTATCAGAGTGATGTGGAGGTGACACAGGAGAGTTTAACTCGACACAACCTGGGATGGATATACAACTTGTCAACAGCACCAGTCAAATTGGTGGCTGACATTGAAGAAATTGAAATCACTGTTAAAGAAGAAACCACTGCTAAAGAAGAAGACACATCTGATGATGAATACCTGATGCCCGTGTGCGTTGTACCAATCAAAAGTGATGACAAAAACAATCGGTCCCCAATTAAAGAAAGTAATGATGATAAAACGAAAATCAAAATAAAAGAAGAAATTGTACTCAATAGACAAATACGATTGCGAAAGCCACATACATGTCCTatatgtaacagtgccttcaatacaaaacctcttttacgcaaacacatggcaacccacactgacaacaactcccgtgtttgcaaagtatgtaacaaagcatttatctatagtgtttgtcttaggaagcacatgaaaattcacacagaggggagacaatatacttgcaatgtgtgtggcaaatcctactgtatgaagcaaggcttaaagaaccacatgaatatacacaccggagcaaagccgtacacatgcagtgtgtgtggaaaatcattctctagtccttcaactttaataaaacacaagacaatacacactggtgagagaccatactcctgtgacgtatgctataaaaaattcaggcaaagtggtgatttgaggagacacatgaaattgcatactggagaaaagccatttacctgcaacatttgcaacaagtcatttattaagagatatatattaaaaaatcatatgaatatacacactggagaaaagccctataattgcgaaatttgcaataagtctttcaggaaaagcaccaccttggcattccacactgtacgtcatgctggagaaaagccatatacatgtcctatatgtaagagtatctttgatctcaagcctcttttacttaaacatattgcgacccacaccgacaactcctcatatgtgtgcaaaatttgtagcaaagtttttgttcatagtattcttttaaagcaacatgagagaattcacatggatacaaaacgttttacttgcaatgtgtgtggcaaaaccttctgcaggagtaatggtctaatcaatcatatgaaaacacacacaggagaaaagccctataagtgcaatgtatgtgacaagtcatttcctcggaaggagacattagagggacacataagaatacacacgggtgagaagccgtactcttgtgatgtatgcaataagaaattcacttttaaccacggcctaaacacgcatattaaaatacacactggagaaaagccatttagttgcagcatctgcaacatgtcatttattggaggttataaactgagaagacatttgaaagttcacagcaaagaaaagccttag
- Protein Sequence
- MPSSVCRICLCSDLKMYYIENNKKYSQEDYQRFTGTLLVSGDNRPRTVCYMCDAQLVRCWRFFDMCQKAEKICTDLYQNDVEVTQDSLTRHNLGWIYNLSTAPVKLVADIKEIEITVKEEITAKEEDTSDHEHRVPVCAQQIKSDGNCNVPAIKESNEADTAPTRVGNRNEADTAPTRIGNPNKKGIRVETKIKIKQEIVLNRQIRLRKPYTCPICDTAFDTKPLLRKHMATHTDNTSRVCKVCNKAFIYSVCLRKHVKIHTEGRQYTCNVCGKSYCMKQGLKNHMNIHTGAKPYTCSVCEKSFSGPSTLIKHKTIHTGERPYSCDVCYKKFRQSGDLRRHMKLHTGEQPFTCNICNKSFIKSYILKNHLKTHTGKKPYNCEVCNKSFRNSTTLAFHTLVSGDKRPRTVCYMCNAQLVRCLKFFDMCQTSEKICTDLYQSDVEVTQESLTRHNLGWIYNLSTAPVKLVADIEEIEITVKEETTAKEEDTSDDEYLMPVCVVPIKSDDKNNRSPIKESNDDKTKIKIKEEIVLNRQIRLRKPHTCPICNSAFNTKPLLRKHMATHTDNNSRVCKVCNKAFIYSVCLRKHMKIHTEGRQYTCNVCGKSYCMKQGLKNHMNIHTGAKPYTCSVCGKSFSSPSTLIKHKTIHTGERPYSCDVCYKKFRQSGDLRRHMKLHTGEKPFTCNICNKSFIKRYILKNHMNIHTGEKPYNCEICNKSFRKSTTLAFHTVRHAGEKPYTCPICKSIFDLKPLLLKHIATHTDNSSYVCKICSKVFVHSILLKQHERIHMDTKRFTCNVCGKTFCRSNGLINHMKTHTGEKPYKCNVCDKSFPRKETLEGHIRIHTGEKPYSCDVCNKKFTFNHGLNTHIKIHTGEKPFSCSICNMSFIGGYKLRRHLKVHSKEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00699430;
- 90% Identity
- iTF_00699430;
- 80% Identity
- iTF_00699430;