Edod006345.2
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000029.1:1345804-1355226[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.015 0.91 10.4 1.5 3 23 643 664 642 664 0.92 2 23 5.9 3.6e+02 2.3 1.1 4 21 1029 1046 1027 1047 0.87 3 23 0.13 8 7.5 1.4 1 21 1055 1075 1055 1076 0.96 4 23 0.00028 0.017 15.9 0.9 3 21 1150 1168 1150 1169 0.96 5 23 0.35 21 6.1 0.5 2 23 1177 1199 1176 1199 0.93 6 23 0.02 1.2 10.0 0.8 3 23 1218 1239 1216 1239 0.92 7 23 0.00048 0.029 15.1 0.5 1 23 1244 1267 1244 1267 0.93 8 23 0.09 5.5 8.0 0.0 1 23 1293 1316 1293 1316 0.91 9 23 0.021 1.3 10.0 3.4 1 23 1321 1343 1321 1343 0.97 10 23 0.017 1 10.3 0.2 1 23 1349 1372 1349 1372 0.95 11 23 0.013 0.77 10.7 1.0 1 23 1385 1407 1385 1407 0.97 12 23 0.0002 0.012 16.3 1.8 1 23 1463 1486 1463 1486 0.97 13 23 0.00017 0.01 16.5 1.4 1 23 1538 1561 1538 1561 0.95 14 23 0.0023 0.14 13.0 1.5 2 23 1586 1608 1585 1608 0.95 15 23 0.022 1.4 9.9 0.1 2 23 1614 1636 1613 1636 0.94 16 23 0.45 28 5.8 0.4 1 21 1676 1696 1676 1697 0.87 17 23 0.0014 0.084 13.7 0.6 1 23 1707 1729 1707 1729 0.93 18 23 0.00012 0.0074 17.0 0.4 2 23 1816 1838 1815 1838 0.93 19 23 3.7e-07 2.3e-05 24.9 1.4 3 23 1845 1865 1844 1865 0.98 20 23 0.0068 0.42 11.5 0.2 1 23 1884 1906 1884 1907 0.95 21 23 0.38 24 6.0 0.0 1 23 1930 1952 1930 1952 0.97 22 23 0.031 1.9 9.4 0.6 1 23 1958 1981 1958 1981 0.95 23 23 0.00043 0.026 15.3 0.5 1 23 1989 2012 1989 2012 0.96
Sequence Information
- Coding Sequence
- ATGACTGTGAACTATGATCGTGTTTGTAGACTGTGCATGTCATTTCGAGGCGAATTACTGCCGATTTTTCCTACCATCAGTTCGGATGAGTTGGAACCTTCCATCCTCGCAACAAAAATCAAGGATTGTGTGTCTGTAGAGATAAACGAAAATGACGAGCTGCCGACGAACATCTGCAGGAAATGCGTGGATAATGTCAACAACTGGCATTTGTTCAAGACTGTATGTGCAAAGACACAAAACAAACTACTGTCTCTCACAAGAAAGGATGGAAGCCTACTAGAAGAGGTGCAAGTAAAAAACGAGCCTTCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGAATATACCCTGAAAATGAGCAAGCGGTGGCTTCAAAGCTGCAACCAGAAGGTCCCCCGATCCTGGCCTCGTTGGGACTTACACCGAGGAGTGATAAGAATTATGTGGATCCACGAATGGATTGGCAACGAGTTCATGCCATATTGGGTATGATTCAAGAGAATAATGTTATCGACTCGCTACAATCCATCGAAGAGAGTGATGAGTTGCACCATTCCGATCATGATTCAGACTCGGAGGCAGAACTCCAACCGGACATAGATGATATCTACACCGATTGTAAAACTGGCTACATTTCCAGAAACAAGACCATTCTGGTCAAAAGACCCCTTAACATtccatacaaagaaaatactatgAAAGTGAAAAAACGCAGACATAATATTCATAAACACTGTGGTAGCCCCAAAAGTGCTTGGCAGCTACTGTTTACCGAAGACCTTCTCGATCTCATTGTCTCCGCAACCAACGAAAACATTCTCAGGCACAGCAAAGTGTTTCATGGCTGCACTAGTGTCGGGGAAGTCAGGAGTCTTTTTGGAATTTTATACCTGAATGGTATAATGAGGCCAACTCATCAGAAATGCAGTGACCTCTGGGACAAACACATTGGCGTCCCGTCCGTTATAAACGCGATGACGAACGAACGCTTCAACTTTCTCTTACGAAATCTCTGTTTCCATAGCCAAGATGATGACAACAGCATTATGCAGTTCGATACAATGAAGCGAATCCGCAAAGTGTTCGAGATATTCGTTATGAACTGCAGAAGTACATTCGACGTGCAGAGCACCGCGGTCGTTGATGAGATCATTGTGCCAGTTTTCGGACCTTGCCCGTTTCGATACGACATCGATAAGAAACCATTGAAACGTGGAATTAAAATGGTGCTGCTAGTCGATCCGAGTAATTTCTACGTGAGCAACCTAGATGTGATCACAGACCCATATTTCGCAGGCGACGAGATTGTTAAAAAGATCACTCAACACTTGTATGGTACTGGAAAAACTATTATTATGGACAGCTGGTATTTTTCCACTGGCTTGATGGAAAGCCTTAAAAATTATAACCTGTATACCATGGCAGCCCTGCATCCGAAAAGCGACGCGATACCTCCGCTGTTTCTGTCGAAGCCCAGGAAAACTTACATTACTGGATTTAGCGACGAATTCTCGCTAACTTCTTACATAAACGCGCGGTCGAGAGCGATCAACGTTGTGACAAACCTGCCCCAGTTCAATAAGAAAGGTCACACGAACCGTTCGACATCAGTATCAGCTTACAAGAAAGACCAATCGGCTGTGGAGGTCCTTGATGTTTTAATGCATTACTATACTACGTTGCAAAATACGAACGATTGGACACTATCACTGTTCTTTATATTGTTGAATATTGCGTCAGTAAATGCTCAGGTGGGAATGGAGAGTGACAAAGACGAAGATGAAGATTATGAAGACGAAGTGAAAATCCCGCAGCCTGTGAAGGTGCCCCACATGCCTGAAGTATCCATTACCGTAATGCGGCCCACGGGAGAAACGCTGCAGTCGCGACAAGGTATCCAACAAATTGCCTCTAAAGACTGTCTCATCTGCGGACGCAGCTATCGGTACTCGCACAACGCGAGGCGACATGAACTCAATACACACAAATTCGACCGCTACACCAACAGAATAAACAAACCGAAATCACATACTCGCATGCAGCCAAAACTCCGACCAAACCCTTTTAACCCGAAAGCGCGTCTCATGCCTAATCCTATTAGCCACAAAATGCAGTTACTACCAAAAATGTCCCCGAAATTCATGTCGCAGCACCAGAATCCTCAATTCCATAGGAAAATAATAACACCGCCGAAACCGATACCCATAAAATTTGCAAAGACACCACAAAACAATTTACCCTATCCGCTGCGTATCAAAGCTCTCAAAGATttgcagataaaaaaaaaagaaccacagattttaaaaactttgctCACCGCCAAGCCTGAGGTGTTGGTCTCGGAACCAGAAATAATGAATTCTGGCCCCGAGAGCCCGGAGACTTTGATCTCTGAACCTGAAATAGCGTCGTTCCAAGTTGAAACTATTCTCTCAGAGCCCaatgattatgatgaaaatGAAGATGAGGAGGGTGATTCTGAAATGCACAACCATCAAAGTCAAAACTATGACACAGTGGATATGGATTCTGAAAATGAAATAGAGATAGCTCGGCAGCAAGAAAGTCTCGGAGATAACGAAGAAAATCCTAATGAAGAGGAAAATCAGCAAGACGACGACAATAATTTTGATGAGGCTGACAAAGAGGATGAAAATGATAGTGTAAAAGCGAGCCCCCAAGATGTAACTCACGCTGCAACTGAAGATGACAGTGCAAATATGGttattgatgaaaatgatgaaaCTAAAGAAGACGAGCCAAAcaatgaagaagaagaagatgaagAAGATAATGATGAAACTAATAATGACGAATTAGACGCTAGTCAGGCTGAACAAAATGAGGATGATGAAGAAATTCTCGGACTTACTCCTCAAATCGAGTTGAACGAAGAGATGCAAAACAACTCTACAATGAATGACGAAGAAGAAATGGACGATACCGCTGAGTGCAACGATACTGTCGACGGCGAAGCTGAGGAGCCAGACGCTCCACAAGGCTTTGTCACCAGCACTCAGAGAGACTTCATCAAAAGGTATCGTGATATCATCCTACAGATTAACACCCAGAGATGCCTATGTTGCGACAAAGAATATCCGCGTAGAAAATCCGTGATTCAACATCTGCAGAAAAATGGATATAAAGTCCCAAAGCACACTTGCTATAATTGCGTCGTTACTTTCACTCACATTGGAGCTCTGCTAAGTCACATGAGGCATAACAATTGCACTGATCTCTGGAAGATTATTTACGAGGATAACGGAATCACCAGCGATATGGTCATCGAAGAGCCTAAGAGCAAAATACAAACCAAAGATATTTTCAACGCGAAATCGTATGCGTGTAGATTGTGCACCGCCAAATTTCAACTAAAACAATCTATCATGAAACATGTTTCTGAGTTCCACGAGGACGGGCAGTCGTCGGTTCCTATGGGCTGCGTTCACTGCGGAGCATCCTTCAAAGATAAAACATTACTCAAGAAACATATTCGGAACGGCGAATGTACTGTGTATATCCATTGCGATTTATGTTCAGAACAATTTACCAATATGCAAGAATTTAACGATCATGCGTTGTCTGCTCATGCTGAGCACTTTGTCAAATCTGAAAACCAGAGTGTTGATGGACGGCTCACAGACTGCTATCTATGTGGAACAAAGACTAGCAGCTATTCAAACTTGCTCAAACATTTCAAAGCGGAACATGATCAAATATTGCATCCTTGCCAATTTTGTGGAGTTAAATTTGAACAACCAGTCGATCTGAACAAACACATGTATCTGGAGCATCCCGGCCAAACTCCCGATTTGAATGCCACCCATCCCGATATGTCCCTTGTCAAAGAAGAGGCTGAAGAATACCACTACTCTTGCACCGAGTGTAATGCAATATTCGAGACTGTAGACGAATGGACTGATCACCAAGTGGCTGAGCATAACCAAGTGGCGCATCATTGCGACCAATGCGAAAAGAAATTCCTGCGACCTTCAGAGCTTGCAGAACACAAGAATACCCACTTGAGAGTTAAATTCTATCCCTGCAGTGTTTGTTCAAACTCTTACAGCACTCCGCAAAAGTTGGCTGATCACGTCCAAAACTCGCATCCTGGTGCCGGGACCAATGTTAGCCCTGATCATGAATTTTTCTGCGAAATGTGTATTCGACCATTCAAAAGTCGCCAGGCCTACTCGAATCATATGCGCATTCATGCTAAAGTACCAACCACTAACAGAAAACCACAAACACCACAGGCACTCAAAGAGTTCGACCCACGTATAATTGGGAAACCCATCAAGCAATTCAACATGTCTAGTTTAGTTCAATCTTCAAACGTCTACAACTTCAAGCCAAACGCAAATGTGCCCAATGCTCCTTATTCTTGTGACATTTGCGGCAAAGGTTTCATGCACAAGAAAAATATTTGGAAACACAAAAAAGTGTTGCATGCCGATATTATTAATGATAGAAATGATAGCGAAGAGAATACAATGCACGCCTCCACCGAAGAAGATGATTACAACGTCGATGAAAACGGATCTATACTTTCGACGCCGCAATTCAATAGTTTCGCTTTTCCGGTGGAACCTTCGCCGAGCGTTCATGAATGTGAATTATGTGGAAAACAATTCCCTCTGAAGTCTAGTTTGATTAAGCACAAACGTGCAAAGCACGGAATTGTTAATACAAACCATGCCATTAAAACTGAATCACAAGCTTCCCCTAGCGAAGGTGGTGGTCGATCCAGTTGCACCATTTGTAAAATTACATTTGCAGACAAAAAATCTTATTATCGTCACAGAAAGAACGTCCACAAATCAGCTACGCAAATGTGCAAAATATGCGGCAAGCCCCTTAACTCGACGCAGGAGCTGTATGAACATCTAAAAGCGGCCCATGCTAGCTTGTTGCTCGGTTACGACGCTAACCAAAGTACGAGTAAGAATCAGGATGACATGGATCCTGAGTACGACGAACCAGAAATTGCCAATCCAAACATTGAATATCAAGCAAGGTACCCATGTGATACATGTGGTAAACAATTTTTAGGATTACTGTCTTTGCAAAATCATCAGTGTGTAAGCCAACCTCCATCGCAACCTCAGACTTTTGACTGTGAAATTTGCCACAAAAGCTACACGTCGATCGCTGCGTTAAAGAGCCATCGTGGTTGGCATCTCCGATCCCCCGATGGCAAAGCGGCTGCTAATAATAGCGGTCTTTGGATGCCACAACATAAAGTTACCAGTAAGGTTAGCAAGCACGAAGTATTAGAAGCTGCCCAGCCTACAGGAGGACGATCGCAATCGACACCTTCCGTAGCGAAAAGGAGACTCCCTCCTGAAGTGGAAGTGACCGTTGTAAACCCGAACAAAAAGATGCGCTCTGACGATTCTGTCGAGATGGAACAGCACGGTGACGCAGTGGAAGGCAAGTACTGTACGATATGTGACAAAGAGTTTACGAAACGTGCGGCATATCAACGGCACATGGACGAGGTGCACCAGCCAAACTCCGTGTTTTGTCCAGTCTGTGATAAGAGCTTCACGCGAAAATCGACTCTGCTCGTTCACATGAAGAAGCATTACGAAGGTGGCGGAGAAGGTAGCTCCACGGCTCAAGTTGATGAAGATGAAGGGTTTCCGTGCGAAGTTTGCGGTGCGCAGTATGATACTGAGAACGCTTTACGCGCGCACAAGATAAGACATCATGGTGATGAGGAATCAGGTGATTCGGAGGATGATGGGGAAGTGCCCATGCCGGCGCAGCCCGGCGAGTTTACTTGCGGCCAGTGCGGGGATGGCGTGGCCACGGCGCGCGATCTGATCACGCATCGCGCGATACACTCAACGCACACTAAATTCTTCTGTAATATCTGCAAAGTGTACTTCGCCAGGGCTTTGGATCTGTCATCGCACACGCGAGCGCGGCATGCAGACAATGAGAAAGTATTCTTCCCGTGTGCCATGTGTGATCGCTTCTACATGAACAAGAAAAGTTTACAGCGACACATCGATATGGTTCATTGA
- Protein Sequence
- MTVNYDRVCRLCMSFRGELLPIFPTISSDELEPSILATKIKDCVSVEINENDELPTNICRKCVDNVNNWHLFKTVCAKTQNKLLSLTRKDGSLLEEVQVKNEPSDEAYDDGVVIDGIYPENEQAVASKLQPEGPPILASLGLTPRSDKNYVDPRMDWQRVHAILGMIQENNVIDSLQSIEESDELHHSDHDSDSEAELQPDIDDIYTDCKTGYISRNKTILVKRPLNIPYKENTMKVKKRRHNIHKHCGSPKSAWQLLFTEDLLDLIVSATNENILRHSKVFHGCTSVGEVRSLFGILYLNGIMRPTHQKCSDLWDKHIGVPSVINAMTNERFNFLLRNLCFHSQDDDNSIMQFDTMKRIRKVFEIFVMNCRSTFDVQSTAVVDEIIVPVFGPCPFRYDIDKKPLKRGIKMVLLVDPSNFYVSNLDVITDPYFAGDEIVKKITQHLYGTGKTIIMDSWYFSTGLMESLKNYNLYTMAALHPKSDAIPPLFLSKPRKTYITGFSDEFSLTSYINARSRAINVVTNLPQFNKKGHTNRSTSVSAYKKDQSAVEVLDVLMHYYTTLQNTNDWTLSLFFILLNIASVNAQVGMESDKDEDEDYEDEVKIPQPVKVPHMPEVSITVMRPTGETLQSRQGIQQIASKDCLICGRSYRYSHNARRHELNTHKFDRYTNRINKPKSHTRMQPKLRPNPFNPKARLMPNPISHKMQLLPKMSPKFMSQHQNPQFHRKIITPPKPIPIKFAKTPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIMNSGPESPETLISEPEIASFQVETILSEPNDYDENEDEEGDSEMHNHQSQNYDTVDMDSENEIEIARQQESLGDNEENPNEEENQQDDDNNFDEADKEDENDSVKASPQDVTHAATEDDSANMVIDENDETKEDEPNNEEEEDEEDNDETNNDELDASQAEQNEDDEEILGLTPQIELNEEMQNNSTMNDEEEMDDTAECNDTVDGEAEEPDAPQGFVTSTQRDFIKRYRDIILQINTQRCLCCDKEYPRRKSVIQHLQKNGYKVPKHTCYNCVVTFTHIGALLSHMRHNNCTDLWKIIYEDNGITSDMVIEEPKSKIQTKDIFNAKSYACRLCTAKFQLKQSIMKHVSEFHEDGQSSVPMGCVHCGASFKDKTLLKKHIRNGECTVYIHCDLCSEQFTNMQEFNDHALSAHAEHFVKSENQSVDGRLTDCYLCGTKTSSYSNLLKHFKAEHDQILHPCQFCGVKFEQPVDLNKHMYLEHPGQTPDLNATHPDMSLVKEEAEEYHYSCTECNAIFETVDEWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLADHVQNSHPGAGTNVSPDHEFFCEMCIRPFKSRQAYSNHMRIHAKVPTTNRKPQTPQALKEFDPRIIGKPIKQFNMSSLVQSSNVYNFKPNANVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMHASTEEDDYNVDENGSILSTPQFNSFAFPVEPSPSVHECELCGKQFPLKSSLIKHKRAKHGIVNTNHAIKTESQASPSEGGGRSSCTICKITFADKKSYYRHRKNVHKSATQMCKICGKPLNSTQELYEHLKAAHASLLLGYDANQSTSKNQDDMDPEYDEPEIANPNIEYQARYPCDTCGKQFLGLLSLQNHQCVSQPPSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVLEAAQPTGGRSQSTPSVAKRRLPPEVEVTVVNPNKKMRSDDSVEMEQHGDAVEGKYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGGEGSSTAQVDEDEGFPCEVCGAQYDTENALRAHKIRHHGDEESGDSEDDGEVPMPAQPGEFTCGQCGDGVATARDLITHRAIHSTHTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIDMVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700323; iTF_00705293; iTF_00321778; iTF_00704254;
- 90% Identity
- -
- 80% Identity
- -