Eabb020375.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000332.1:15-4262[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.035 2.1 9.2 0.6 3 23 47 68 45 68 0.94 2 26 0.26 15 6.5 2.0 2 23 91 112 91 113 0.94 3 26 0.0034 0.2 12.4 2.7 1 23 118 141 118 141 0.97 4 26 0.73 43 5.1 0.1 1 23 146 169 146 169 0.89 5 26 0.0015 0.09 13.5 2.1 1 23 174 197 174 197 0.93 6 26 0.00029 0.017 15.8 0.4 2 23 205 227 204 227 0.97 7 26 0.12 7.1 7.5 0.0 2 23 234 255 233 255 0.96 8 26 4.6e-07 2.7e-05 24.6 0.6 1 23 261 283 261 283 0.96 9 26 9.9e-06 0.00058 20.4 2.1 1 23 289 312 289 312 0.95 10 26 1.3 75 4.3 2.4 1 23 416 437 416 437 0.96 11 26 0.06 3.5 8.5 0.5 2 23 513 535 512 535 0.94 12 26 3.2e-05 0.0019 18.8 0.2 1 23 540 563 540 563 0.95 13 26 0.088 5.2 8.0 5.6 1 23 566 589 566 589 0.95 14 26 0.074 4.3 8.2 0.4 1 23 595 618 595 618 0.94 15 26 0.0054 0.32 11.8 0.6 2 23 626 648 625 648 0.95 16 26 0.055 3.2 8.6 0.6 1 23 653 675 653 675 0.98 17 26 2.3e-07 1.4e-05 25.5 0.3 1 23 681 703 681 703 0.99 18 26 0.19 11 6.9 0.6 1 23 777 799 777 799 0.96 19 26 1.5 90 4.1 0.0 2 22 825 845 824 847 0.89 20 26 0.55 32 5.5 0.1 3 23 871 892 869 892 0.93 21 26 0.00068 0.04 14.6 0.2 3 23 900 921 899 921 0.97 22 26 0.0015 0.088 13.5 0.6 3 23 928 949 927 949 0.95 23 26 0.011 0.62 10.9 2.3 1 23 955 978 955 978 0.98 24 26 0.0011 0.066 13.9 2.2 2 23 985 1007 984 1007 0.95 25 26 0.024 1.4 9.7 1.3 1 23 1013 1035 1013 1035 0.94 26 26 0.015 0.91 10.4 1.2 1 23 1041 1064 1041 1064 0.89
Sequence Information
- Coding Sequence
- ATGAAAGATCCCGGTTTTCTGAGGCAGCACACCGCTGAGAGCCACGCGAATGCCAACCTAGAGCTAATAATTTACGATAGAACAAAAAGTAACAGGAATAAAGACGCAGCGATCAAGATAGACGTTACTGATATCTGTTGCAAGCTCTGTGAGCAATCTCTGAACTCACTGGAGGAACTTATCCATCATATCATCATAGCTCATGATGCTGAGTATAACGTTAATATCCCGAACTGTGTGCTTCCTTTTAAACTCGATAGGGACACCCCTACGTGCGCAACTTGTGATTCTAAATTTGCTTTCTTTGAGTATCTGTTGCGACACGCAAATAAACACCACCTCTCTCACCAATTCGTTTGTGATGTCTGCGGCACTAGCTTCCAAGGGGAGATTCACCTCAAAATGCATCATAGATACTACCACCGCGAAGGTGGCTACGTCTGCGACACTTGTGGCATAAGTCTTGCGACGATATCTAAGAAAATCTTACATGAAAAGAACGTTCACAGTGTTAATCTTCACACTTGCCCACACTGCCCTGAAACTTTCAAAAGCCCGTATCTAAAGAAGCTTCATTTAGCTAATGATCACGGGGTCGAGGAGCTCAAAATCAAGTGCCCGTATTGCTTCAAAGTGTTCCCGCAAGAAAGCATAATGTCAAGGCATATGAGACGTGTCCATTTACGAGAGAAGAATGTGGAGTGTGGCGTCTGCGGAGACAAATTCTTTGGTCCCTACGACGTGAAACTTCATATGCTAAAACATAACGGGGATAAGAAATTCGTCTGCACAGTATGCGGGAAGAAATTCGCTAAAAAGAGCAACCTTAACTCTCACATGGTCTTGCATACGAGAGAAAAGAACTTCTTGTGTCAAGTTTGCGACAGATCCTTTGCACATCAAGCTACTTTAAAGATGCATATGCGAAGTCGACATCAGCATAACGTTGACTGCAGGTATGAGGTAGAAGGTATAAGTCTTGAAGATGAGAGAATAGAGTATGATGATGAACTGAGAAATGATGAGGAAGTGGGGATTGAGCTTCAGGATCAGAATATTGAAGTGATTGAGGGACTGAACGATGATGAGATCACTGAGCTTATACAGCAGGGGGGGTTGGAAGTACAGGTGCACTGTAGCAACACTCACAGCAGTTACCTGGACCGACTTGGTAAACTCAGACGTAACATTTTCACCGTCCTCTGTTACTCAAACGTTACGCCTTTCAATTGGAACACGAAGGGCTTCCGTTGCTTCTACTGCTCAAAGCAGCTGCGAGAATCTAATATCAAAGAACACACAGACAAGCATAATGCTGTAGACCTGGATGATTTCGTCAAAAAGCATGTTATTACCAAAGATATACCAGTCAAAATTGATATAACAAATCTAGCTTGCAATTTCTGTCCCGAAACCCCTATCGCATCTTTAGATGAAATGGTATCGCATATAGTTGAAAACCACAACGAATTTTATGATATGGAGACTAAGTTATGTTTCTTCCCTTTTCATCTCAAGAAAGATAACAACATAATGTATTGCGTGCTTTGTAAAACGGAGTTTGACAACTTTCCGTCCCTTATAACGCATATGTACAAGCAGCATGTCACACACTCGTTTATATGTCAAGTATGTGGCATCAGCTTCAAAGACCAGGTCCGCTTGAACAGGCATATCACTGTTTCTCACATCGGCCACCGCTGCACAGTCTGCGACAAAATATTCGACTCGTACCACAGATTAGATAAACATAAGGAAAAATTTCACGGGCATATCAAAACTTACGACTGTAATCTCTGCACTGATAGCTTGAAAAGCAACTATCAACTAAGAGTTCATCTAGGGAAGGTCCACAACGTACAGAAGTATAGGATCAAATGTGAACAATGCGATAAGATATGTACAACCAAGGGGGCTATGGTCTTGCACGTCCAAAGCCTGCATTCCGACATCAGGTACCAGTGTGATGAATGCGATTATACGACAGGCATCAAATGGTTGGTTAAGCTCCATAAACGTAAGCACACAGCTGTCAAGGATTATACGTGCAGTGTGTGTGAACGGGCGTTCGGTCGGTCGAGCAATTTGAGAGCTCATATGAAAGTCCACGCGGGAGAACCTAGAGGTGGCCAGAAAGCAAAGCCATTGATAAAACCGACGCCAGCACCGCCCAAACGACCCGTCAAAAGCCTTGCACCATCCTCCAGCGTACTCGCAACAAAGCCCAAAGGTTTATCCAGTAAGGACAAACGGAACATTATGATCCAAAACGTACTAGCGATTCTTCTTAAGACAACAGCCATGCCTTTCCGTTGGTTAAAGAGTTCCTACCGCTGCTTCTATTGCTACGATATCTTTCAAGAGGCGTCGGACTTAAAAGAGCATCAAACTGCACACAGTGGAAATGCCATCAAGGAAAAGGCAATGAACAACTATTGGGAGCCTGTAGTATACATCGATATATCCAACATGAAATGTCTTCTATGCCCCGAAGAAGTAACAGATCTATACGATATGATCAACCATTTAGTTGCTAAACACAGCATAATTTATAACAAAGATGTGGGCACTTGTATGGTCGCTTTCAAGCTAAACAACTTCGATGTCAGTTGCCTCGCCTGCGGCGCTAGTTTTTACTCCTTCGGTCCGTTGTTGAACCACACTAATAAAGACCACAAAGGAGCATCAGTCATCCTGTGTGACATATGTGGACAGAACTATAAAGACCAGAATCTTTTACGACTCCATGTAAAGTCAGCGCATGACAACAGCGGAATGCTATGCCCGGAATGCGGGGATAAGTTCGAGACGCGATCGAAGTTAAAAACACACCAGATCAACAGCCATGGTGTCGAGCGTAAATTCAAATGCCTCGTCTGCGATCTCACCTTTGGCAGCCATTACAAAAGATCTCGCCACATGGCGACTGACCACAAAAACCGGCAAGAGATCAAGTGTCTGCATTGTCCGAAGACCTTTGTCTTCCGCAGTATGATGATGACGCATCTAAGAGACACTCATTTGAAAGTTCGCAACCATATTTGCGGAATTTGCGGGTGGAAAGCGTTCAACAGTAATCGTTTGAAGAATCACATGTACAAACACAGTGGGGAGAAGAATTTCAAATGTGATTCTTGTGATAAAGCGTTTACGACGCGTAAGATTATGAAGGCACATTTTGCGAGGATGCATAAGCCTCCAGAGGCAGCTCCTGTAGTTCCGATCATGACGCATTATGGGCAATACGGTGGACAGTAA
- Protein Sequence
- MKDPGFLRQHTAESHANANLELIIYDRTKSNRNKDAAIKIDVTDICCKLCEQSLNSLEELIHHIIIAHDAEYNVNIPNCVLPFKLDRDTPTCATCDSKFAFFEYLLRHANKHHLSHQFVCDVCGTSFQGEIHLKMHHRYYHREGGYVCDTCGISLATISKKILHEKNVHSVNLHTCPHCPETFKSPYLKKLHLANDHGVEELKIKCPYCFKVFPQESIMSRHMRRVHLREKNVECGVCGDKFFGPYDVKLHMLKHNGDKKFVCTVCGKKFAKKSNLNSHMVLHTREKNFLCQVCDRSFAHQATLKMHMRSRHQHNVDCRYEVEGISLEDERIEYDDELRNDEEVGIELQDQNIEVIEGLNDDEITELIQQGGLEVQVHCSNTHSSYLDRLGKLRRNIFTVLCYSNVTPFNWNTKGFRCFYCSKQLRESNIKEHTDKHNAVDLDDFVKKHVITKDIPVKIDITNLACNFCPETPIASLDEMVSHIVENHNEFYDMETKLCFFPFHLKKDNNIMYCVLCKTEFDNFPSLITHMYKQHVTHSFICQVCGISFKDQVRLNRHITVSHIGHRCTVCDKIFDSYHRLDKHKEKFHGHIKTYDCNLCTDSLKSNYQLRVHLGKVHNVQKYRIKCEQCDKICTTKGAMVLHVQSLHSDIRYQCDECDYTTGIKWLVKLHKRKHTAVKDYTCSVCERAFGRSSNLRAHMKVHAGEPRGGQKAKPLIKPTPAPPKRPVKSLAPSSSVLATKPKGLSSKDKRNIMIQNVLAILLKTTAMPFRWLKSSYRCFYCYDIFQEASDLKEHQTAHSGNAIKEKAMNNYWEPVVYIDISNMKCLLCPEEVTDLYDMINHLVAKHSIIYNKDVGTCMVAFKLNNFDVSCLACGASFYSFGPLLNHTNKDHKGASVILCDICGQNYKDQNLLRLHVKSAHDNSGMLCPECGDKFETRSKLKTHQINSHGVERKFKCLVCDLTFGSHYKRSRHMATDHKNRQEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHICGICGWKAFNSNRLKNHMYKHSGEKNFKCDSCDKAFTTRKIMKAHFARMHKPPEAAPVVPIMTHYGQYGGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700319;
- 90% Identity
- iTF_00705288; iTF_00697579;
- 80% Identity
- -