Ecen017922.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000996.1:360023-364086[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.019 1.5 10.2 0.5 3 23 47 68 45 68 0.94 2 26 0.3 24 6.4 0.7 2 23 91 113 91 113 0.95 3 26 0.0038 0.3 12.4 2.7 1 23 118 141 118 141 0.97 4 26 0.81 64 5.1 0.1 1 23 146 169 146 169 0.89 5 26 0.00035 0.027 15.7 1.0 1 23 174 197 174 197 0.94 6 26 0.00032 0.025 15.8 0.4 2 23 205 227 204 227 0.97 7 26 0.13 10 7.6 0.0 2 23 234 255 233 255 0.96 8 26 5e-07 4e-05 24.6 0.6 1 23 261 283 261 283 0.96 9 26 3e-06 0.00024 22.2 2.4 1 23 289 312 289 312 0.97 10 26 1.4 1.1e+02 4.3 2.4 1 23 415 436 415 436 0.96 11 26 0.12 9.3 7.7 0.3 3 23 513 534 511 534 0.94 12 26 8e-05 0.0063 17.7 1.1 1 23 539 562 539 562 0.95 13 26 0.28 22 6.5 4.9 1 23 565 588 565 588 0.94 14 26 0.00075 0.059 14.6 0.5 1 23 594 617 594 617 0.91 15 26 0.006 0.47 11.8 0.6 2 23 625 647 624 647 0.95 16 26 0.061 4.8 8.6 0.6 1 23 652 674 652 674 0.98 17 26 2.7e-07 2.1e-05 25.4 0.3 1 23 680 702 680 702 0.98 18 26 0.18 14 7.2 0.3 1 23 776 798 776 798 0.96 19 26 1.7 1.3e+02 4.1 0.0 2 22 824 844 823 846 0.89 20 26 0.61 48 5.5 0.1 3 23 870 891 868 891 0.93 21 26 0.00075 0.059 14.6 0.2 3 23 899 920 898 920 0.97 22 26 0.0017 0.13 13.5 0.6 3 23 927 948 926 948 0.95 23 26 0.012 0.92 10.9 2.3 1 23 954 977 954 977 0.98 24 26 0.0012 0.097 13.9 2.2 2 23 984 1006 983 1006 0.95 25 26 0.027 2.1 9.7 1.3 1 23 1012 1034 1012 1034 0.94 26 26 0.017 1.3 10.4 1.2 1 23 1040 1063 1040 1063 0.89
Sequence Information
- Coding Sequence
- ATGAAAGACCCCGGTTATCTGAGACAGCACACCGCTGAGAACCACGCGGATGCAAACCTAGagttaataatttatgatagGACTAATAGCAACAGGAATAAAGACGCAGCGATCAAGATAGACGTAACTGATATTTGTTGCAAGCTCTGTCCGCAATCTCTGAACTCGCTTGAAGAACTTATCCATCATATCATCATAGCTCATGATGCGGAGTATAACGTCAATATCCCTAACTGTGTGCTTCCTTTTAAACTGGATAGGGAAACCCCTACGTGCGCCACTTGCGATTCCAAATTTGCCTTCTTTGAGTATCTGTTGCGACACGCAAATAAATACCATCTTTCCCATCAATTCGTTTGCGATGTTTGCGGAACTAGCTTCCAAGGGGAGATCCACCTCAAAATGCATCATAGATACTATCATCGCGAAGGGGGCTATGTCTGTGACACTTGTGGTATCTCTCTCGCGACGATATCTAAGAAAATCCTACACGAAAAGAACGTTCATAACGTTAATCTCTACACTTGCCCGCACTGTCCGGAAACTTTCAAAAGCCCGTATTTGAAGAAGCTTCATCTAGCCAACGATCACGGGGTAGAGGAGCTCAAAATCAAGTGCCCGTATTGTTTCAAAGTTTTCCCGCAAGAGAGCATAATGTCGAGGCATATGAGACGTGTTCATTTACGAGAGAAGAATGTAGAATGTGGAGTATGCGGAGACAAATTCTTTGGTCCCTACGACGTAAAACTTCACATGCTAAAACATAACGGGGATAAGAAATTTGTTTGCACAGTTTGCGGAAAGAAATTCGCAAAGAAGAGCAATCTTAACTCCCACATGGTCTTACATACTAGAGAAAAGAACTTCTCTTGTCAAGTTTGTGACAGATCCTTTGCGCATCAAGCTACTCTAAAGATGCATATGCGAAGCCGACACCAGCATAACCTTGAGTTCAAGAATGATGTTGAAGGGCTTACGGATGAGAGGATAGAGTATGATGATGAACTGAGGAATGAAGATGAAGACGTAGGGATTGAGCTTCAGGATCAGAACATTGAAGTGATTGAGGGActgaatgatgatgaaatcaCTGAGCTTATACAACAGGGGGGTTTAGAGGTACAGGTGCACAGTAGCAACACACACAGCAGTTATCTGGACCGACTCGCTATACTCAGACGGAACATATTCACCGTCCTCCGCTACTCAAACGTTACGCCTTTCAATTGGAACACGAAAGGCTTCCGTTGTTTCTACTGTTCCAAACAGTTGCGAGAATCCAATATCAAAGAACACACAGACAAACATAATGCTATAGACTTGGATAGCTTCCTCAAAAAACATGTTATAACTAAAGATATACCAGTCAAAATTGATATAACAAATCTAGCTTGCAATTTCTGCCCGGAAGTTCCAATTCAATCTATAGATGATATGGTTTCTCATATAGTCGAAAACCACAATGAATGTTATGATACAGAGACTGAATTATGCTTTTTCCCTTTTCTTCTCAagaaagataataatataatgaattGTGTGTTATGTGAGACGGAATTTGACAACTTTCCGTCCCTCATAACGCATATGTACAAGCAGCATGTCACGCACTCGTTTATTTGCCAAGTATGTGGTCTCAGCTTCAAAGACCAGGTCCGGTTGAACAGACACATCACTGTTTGTCACACCGGCCACCGCTGCACGGTCTGCGACAAAATCTTCGACGCACACCGTAAACTGGACAAGCATAAGGAGAAGTTCCACGGTCATGTCAAAACTTTCGACTGTAATCTCTGCAATGGTAGCTTCAAAAGCAATTATCAACTCAGAGTTCATCTAGGGAATGTACATAACGTCCAGAAATATAGAATTAAATGTGAACAATGTGACAAAATTTGTACTACAAAAGGCGCTATGGTCTTACATGTCCAAAGTCTGCATTCAGATATAAGATACCAGTGTGATGAGTGTGATTACACAACGGGTATCAAATGGCTGGTTAAGCTCCACAAGCGTAAGCACACAGCGGTCAAGGATTATATGTGTAGCATTTGTGAGAGAGCTTTTGGGAGATCGAGCAATCTTCGTGCTCATATGAAAGTTCACGCTGGAGAACCTAGAGGCGGCCAGAAAGCAAAGCCTTTGATAACACCGACGCCTGCACCGCCCAAACGACCCGCCAAAAGCCTAGCTCCATCTTCCAGCGTACTCGCATCCAAACCCAAAAGCTTATCAAGCAAGGACAAGCGGAACATAATGATCCAAAATGTACTAGCAATTCTTCTTAAAACAACAGCCATGCCTTTCCGTTGGTTAAAAAGTTCCTACCGTTGCTTCTATTGCTACGACATCTTCCAAGAAGCGTCAGACTTAAAAGAACACCAAGCAGCACACAGTGGTGATTCCATCAAGGAAAAGGCTATGAGCAACTATTGGGAGCCTGTTGTTTACATCGATATATCCAACATGAAATGTCTTCTATGCCCTGAAGAAGTAACAGATCTATACGATATGATCAACCATTTAGTCGCTAAGCACAACGTTGTTTACAATAAAGATGTTGGAACTTGTATGGTGGCTTTTAAACTTAATAACTTCGATGTTAGTTGCCTCGCTTGTGGGGCAAGCTTTTACTCCTTCGGTCCGTTGTTGAACCACACGAATAAAGATCATAAAGGAGCATCGGTAATTCTCTGCGATATTTGCGGACAGAACTATAAAGACCAGAATCTTTTACGACTCCACGTCAAATCAGCTCATGACAACAGCGGAATGCTCTGCCCGGAATGCGGGGACAAATTCGAAACGCGATCAAAGTTAAAGACACACCAAATTAACAGCCACGGTGTGGAACGGAAATTCAAATGCCTCGTCTGTGATCTGACTTTCGGCAGCCATTATAAAAGATCTCGGCACATGGCGACCGATCACAAAAACCGACAGGAGATCAAATGTCTACACTGCCCAAAGACCTTTGTCTTCCGGAGCATGATGATGACTCATTTAAGAGACACTCATTTGAAAGTGCGGAACCATATATGCGGGATTTGTGGGTGGAAGGCTTTCAATAGTAATAGATTGAAGAATCATATGTACAAACATAGTGGGGAGAAGAATTTCAAGTGTGATTCTTGTGATAAAGCCTTTACGACTCGGAAGATCATGAAAGCACATTTTGCGAGAATGCATAAGCCTCCAGAAACAACTCCTGTAGCTCCGATCATGACGCACTATGGTCCGTATGGTGGACAGTAA
- Protein Sequence
- MKDPGYLRQHTAENHADANLELIIYDRTNSNRNKDAAIKIDVTDICCKLCPQSLNSLEELIHHIIIAHDAEYNVNIPNCVLPFKLDRETPTCATCDSKFAFFEYLLRHANKYHLSHQFVCDVCGTSFQGEIHLKMHHRYYHREGGYVCDTCGISLATISKKILHEKNVHNVNLYTCPHCPETFKSPYLKKLHLANDHGVEELKIKCPYCFKVFPQESIMSRHMRRVHLREKNVECGVCGDKFFGPYDVKLHMLKHNGDKKFVCTVCGKKFAKKSNLNSHMVLHTREKNFSCQVCDRSFAHQATLKMHMRSRHQHNLEFKNDVEGLTDERIEYDDELRNEDEDVGIELQDQNIEVIEGLNDDEITELIQQGGLEVQVHSSNTHSSYLDRLAILRRNIFTVLRYSNVTPFNWNTKGFRCFYCSKQLRESNIKEHTDKHNAIDLDSFLKKHVITKDIPVKIDITNLACNFCPEVPIQSIDDMVSHIVENHNECYDTETELCFFPFLLKKDNNIMNCVLCETEFDNFPSLITHMYKQHVTHSFICQVCGLSFKDQVRLNRHITVCHTGHRCTVCDKIFDAHRKLDKHKEKFHGHVKTFDCNLCNGSFKSNYQLRVHLGNVHNVQKYRIKCEQCDKICTTKGAMVLHVQSLHSDIRYQCDECDYTTGIKWLVKLHKRKHTAVKDYMCSICERAFGRSSNLRAHMKVHAGEPRGGQKAKPLITPTPAPPKRPAKSLAPSSSVLASKPKSLSSKDKRNIMIQNVLAILLKTTAMPFRWLKSSYRCFYCYDIFQEASDLKEHQAAHSGDSIKEKAMSNYWEPVVYIDISNMKCLLCPEEVTDLYDMINHLVAKHNVVYNKDVGTCMVAFKLNNFDVSCLACGASFYSFGPLLNHTNKDHKGASVILCDICGQNYKDQNLLRLHVKSAHDNSGMLCPECGDKFETRSKLKTHQINSHGVERKFKCLVCDLTFGSHYKRSRHMATDHKNRQEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHICGICGWKAFNSNRLKNHMYKHSGEKNFKCDSCDKAFTTRKIMKAHFARMHKPPETTPVAPIMTHYGPYGGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700319;
- 90% Identity
- iTF_00696656;
- 80% Identity
- -