Basic Information

Gene Symbol
arid5b
Assembly
GCA_030522745.1
Location
JAPYZB010004939.1:1-6069[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1e-24 1.4e-20 75.5 0.0 1 89 77 163 77 163 0.95
2 2 1.2 1.6e+04 -1.6 0.0 9 33 546 573 543 585 0.86

Sequence Information

Coding Sequence
CCAAAACTAAAAGGCCGACCGCGCCGGAAGCGCAAAAAGCGCAGCGTCTCGCCGTGCGGCGAGTCGAGCAACGAGAGCGAGGCCTCAGTGGCCTCCTCGGCCGCCGCCTCCACCTCCAAGGGCTCCAGCTCGTCCTCCTCTGCAATCGCCGCGAgtagcaacagcagcagcagcaggcgcaTCAACAACCTGGCGGCGCTCGGCGGCGTTGATCGCAAGCCCAGCCCCGAGGAGAAGAAATTCGTCAGCGACGTGCACAGCTTCATGTCCTCGCGGAATACTCCGCTTGGCAAGATGCCCCTGCTCGGCTACAGGCAGATTGACCTGTTCCTGTTTTACACAAAAGTCCAAGATTTGGGTGGCTACGACAGAGTTAGTGCAAACCGTCTTTGGAAGTCAATATACGATGACATGGGTGGCAACACAGGATCGACAAGTGCTGCAACTATTACAAGAAGGCATTATGAAAAGCTACTTCTACCTTACGAGAGATGTCAGAAGATTGATGAAGCCAAGATCAAAGCAAATCTGGCAAACAGACGCATCAAAACGCCAAGTATATCGGACGCTTCAGAGGATTCCGTTGAAGTTAAAAGAGAGACTGAAAGCCCACCGCCTTCGGAAACGCCACCTCCTAGTGAGGCATCCAACTCCACAGTCACTCCACCTCCTCTACAGTCAATTCTTTCGACTTCGCCATTCCTGCCGGGAGACAAGCAACCGCGCGCCGAGTCCGGCAAGACCTCGTCGCTGCGCAGCGTGCGTGTCAAGCCCGAGCGGCTCAAGTCGCTGAACACGATTATCGCGACGAGCAATCCAGCGAACGGCCCTGCCAGCAGCAACCCCCAACTGCCCAGCTCGCCCACGACGATGGCGGGCACGACCTCGTCGTCGGGCGCCTCCTCGCCCACTGGCACGCCGCCCGCTTCCACGACGCCGACGGCCGGCCAGCAGCACAGCGTGCTCGAGCGCCAGCTCAACAGTCCGTTGATAACTCAACAGGTACCACCATCGTGTTCACCTCCGGGCCTGCCAGTGAGCACAGTGGCCACGAATGCGACGACGGTGGTGACGCTAACCCCGCCCCCGGAGAAGGACATGAAGGAGATCAAGCTCGATTCGAAACAGACGTCACTGCTGGCTCAGGGCAAGGAGAACATACCGCTGTTCGAGGAGAAGGCCGGCGTCATATTCGCGGAAAAGCCGCGCTCGCCCGAAGTCATAGATCTCGAGACGGAGACAGAGTCCGGCACCCGGGATAAGCTTATCATTCCCAGCTTCAAGAAGCGCAAGCTCGAAATATTGCGCGAAGGCGGCCTGGAGGTCACGCCCGTTGAATTAGATGCCAGACCGAGCGTTATTCAGCCTACAACGACAGCTTGCCTCTCTTCCTCAACGACAACGACCACATCGTCCTCGGCGCCGTCTCCAACACCGCTAGTAACTCCGACACTCTCCGGTCAAGTTACGCCACAGTCACCCATCAAACAAGATGAAAAGTCCGCTTTTACGCTGCCTCCATCCGCGGTGATTCCCAAATTGATAAACGTTACAGTCACCCCGGATATCGGCCATATGCTGCCACGCTCAGGAGAAGATCGTCAGCACCCCCTTACACCCGTtaaacagcaacagcagcagcagcacatgGCGGCAAATGGTTCGCCGACGGCGCCTGGGCAGCCATCGCCCGCTGTAAACAGTCGGGTTATTAATCTGGGCAACTCCAACAACGCATCGCTGTTGCAGCTCTACGCTGCCGCGCAAGTCAATCCCCGGTTCGTACCGCCGCTCTTGACGAATGGCAGACCTATGCCGCACAAGGTCACGCAGTCCAAATCGATGTTTGCGAGGGATGAAAAAATGGTTTACGGAAATCCAAAGGATATTTTGGTAACTCCAAAATATCTGCCACCTGTGCTGCCGCAGCCACATGCGCCTAGGAATCCAAGtgTTTTATCAGCACCGAGCGTAAGATGCGGTAGCGGCAGCGATCCTACTCCAGGTGGTGTCCTTGATCTCACCCAAAAAGCCTGCTCAACTCCTGAGCGACCAACCTACGGTCGACCACATCTGGAAATCGTCAGGGTGCCGGTAGTGCCACGACCAACGCCGTTAAATCTCGACACGCGTCTTCAGAACATGGAAGCTCATTATCGCGCTATGAACATGCCGACCAACCTCTGCAAAGATATGAACAGCAAACCTCCGCCACCGCCTGATTCAATACCAAATGCCCGCAAGACTCAGTTTGTTACTGGGACCGTTGCCACTAATCCAGCCGTTGGATACACGAACGTCCTCGATAGTCGAACGATGGCTACAAACAATTTAGAAATCACGCTGGTTAGTCCGAAAAAATCATCCGGCGGTACCGTTGCCATGCCCCAGGATAGTCCGCCTCGCAATAATAGCTCGGCGCACTCACCAATGCCAGTACAAAGGAAGCCGCCGCCACCACCACAGAAACAGCCACCACCGCCACTTCCACCTCAACCTCAGCAACAGCATCATCTGAACGGCAAGTTTCCCACGAGATTGCCAGTAGAACCTGTATCTCCGTACACACCTCGAAAACCGACTTCAAATAATACCGGCAGTGGAAGTAGTCACCATCCGGTGATACCGAATGTGCCGAACTTGAGCCACCTGAATCATAATGCAGCTGGTAATCAAGAGCCGAGTTTGATCAGTACTGTACTTCAGTTACAGTATATGGAATTAGAGAAAAGAAAACAGGCTGCCGAGGAGCAAAGGAATAATGAACAGCATCGCAGGATAAGCGAAGGCGACAAGCGTACGttgcagcagcaacaacagcagagACTAGAAGACCTTAATGCAGCTGGTAATCAAGATCCGAGTTTAATCAGTACTGTACTTCAGTTACAGTATATGGAATTAGAGAAGAGAAAACAGGCTGCCGAGGAGCAAAGGAGTAAAGAACAGCATCGCAGGATAAGCGAAGGCGACAAGCTTACGttgcagcagcaacaacagcagagACTAGAAGGCGCCGCGAAACAGCAGCAGTCAAGGGAATCTGAGCAACGAAGGCACAGTGTGCCTAGCCTGCCATCGGGTTTCATTCCGACGATACCGCCGGCAAATCCGGCCTTCCTTGCGCACCAGCTCGCCGTCGCCAACAACGGCTCATCACCGAGTGCCGCAGCGGCTGGCGGCAAGTATCTGCCGATGCTTGATCCGATGTACTACTCGGCCTTCTACAATGGCCTGTTCCCTGGACACATGGCCCAGGGAGCACACTTCCTGACACCTGAACTCAGCGCTTATTATAAGGAGTTGCTCGCCTCTTCTCCTGCAGCACAACAGACGAGGCTGGCTGCTATGGCTGCTGGCCAGCAGCACCAGCCCGCTGCTCCAACGTCCAAGTAA
Protein Sequence
PKLKGRPRRKRKKRSVSPCGESSNESEASVASSAAASTSKGSSSSSSAIAASSNSSSSRRINNLAALGGVDRKPSPEEKKFVSDVHSFMSSRNTPLGKMPLLGYRQIDLFLFYTKVQDLGGYDRVSANRLWKSIYDDMGGNTGSTSAATITRRHYEKLLLPYERCQKIDEAKIKANLANRRIKTPSISDASEDSVEVKRETESPPPSETPPPSEASNSTVTPPPLQSILSTSPFLPGDKQPRAESGKTSSLRSVRVKPERLKSLNTIIATSNPANGPASSNPQLPSSPTTMAGTTSSSGASSPTGTPPASTTPTAGQQHSVLERQLNSPLITQQVPPSCSPPGLPVSTVATNATTVVTLTPPPEKDMKEIKLDSKQTSLLAQGKENIPLFEEKAGVIFAEKPRSPEVIDLETETESGTRDKLIIPSFKKRKLEILREGGLEVTPVELDARPSVIQPTTTACLSSSTTTTTSSSAPSPTPLVTPTLSGQVTPQSPIKQDEKSAFTLPPSAVIPKLINVTVTPDIGHMLPRSGEDRQHPLTPVKQQQQQQHMAANGSPTAPGQPSPAVNSRVINLGNSNNASLLQLYAAAQVNPRFVPPLLTNGRPMPHKVTQSKSMFARDEKMVYGNPKDILVTPKYLPPVLPQPHAPRNPSVLSAPSVRCGSGSDPTPGGVLDLTQKACSTPERPTYGRPHLEIVRVPVVPRPTPLNLDTRLQNMEAHYRAMNMPTNLCKDMNSKPPPPPDSIPNARKTQFVTGTVATNPAVGYTNVLDSRTMATNNLEITLVSPKKSSGGTVAMPQDSPPRNNSSAHSPMPVQRKPPPPPQKQPPPPLPPQPQQQHHLNGKFPTRLPVEPVSPYTPRKPTSNNTGSGSSHHPVIPNVPNLSHLNHNAAGNQEPSLISTVLQLQYMELEKRKQAAEEQRNNEQHRRISEGDKRTLQQQQQQRLEDLNAAGNQDPSLISTVLQLQYMELEKRKQAAEEQRSKEQHRRISEGDKLTLQQQQQQRLEGAAKQQQSRESEQRRHSVPSLPSGFIPTIPPANPAFLAHQLAVANNGSSPSAAAAGGKYLPMLDPMYYSAFYNGLFPGHMAQGAHFLTPELSAYYKELLASSPAAQQTRLAAMAAGQQHQPAAPTSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00690879;
90% Identity
iTF_00692692;
80% Identity
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