Basic Information

Gene Symbol
Hr39
Assembly
GCA_030522685.1
Location
JAPYZA010006910.1:7821-10740[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3 6.2e+04 -8.3 11.5 61 162 60 160 41 214 0.45
2 2 7.7e-78 1.6e-73 250.3 0.1 1 408 335 726 335 726 0.81

Sequence Information

Coding Sequence
ATGGAGGGCGTGCAGGTATGCAGCTCGAGTCCAGGCCCGCAGGAGCAGAAGTTCCCGATTAAGCCGGAGCCGGACTTCCGCTCGAGTCCCGGGCTCCAGAGCCTCGGCGGCGGTAACGGCTCCCTCAACGAGACCATAGTCGCCGTGCCCCACGTGCAGCAGCTGCATCATCAGCACCCCCAggcccagcagcagcagagcatcGAGCAGAGCCAGCAAAACGACCTGCCGCTGCTCGTCGACAAGCTGCTTGGCGGCTGCAACAGCTCCACGCCCAATCACAGTCCCGTGCTCATTCCCAGGCATCATCTCACCAAGCACAGCCACACCCGATCTCAAGTCCCATCTCCAGACTCAGCAATACACTCGGCCTACAGCGTGTTCAGCTCACCTACCCAGTCGCCTCACGCTGGGCGTCACTCGGCTCTCGGGCCTGGCTCGCCAGTTCCCTCGTCCTCGCTTTCGCTATCCCGGCACAGCTTCAACAATTCGACTTCATCCTTGTCATTGTCACTGTCGCATTCGCTCTCGCGCAATAACTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCGCTCAGTCCGCCAACGCATTCGCCAGTCCAGCAGCGGCACGCCCATCACCATCAGCAGCAGCACCAGGTCCAGCCGCTCCACTTGCAAGGTCATCACTACAGCGCCGGGGCTGGTGTAGTCGGAGACGTAGGGGAGGGCCACGCTGATGATCAGGACGACTGCAGGATACCCTCGGCGCCCTCGGGCATCTCCACTAGGCAGCAGCTTATCAACAGTCCCTGCCCGATTTGCGGAGACAAGATCAGCGGCTTCCATTATGGAATATTCTCCTGCGAGTCCTGTAAGGGTTTTTTCAAAAGGACTGTGCAAAACCGCAAGAACTACGTGTGCCTTAGGGGCGCGTGCTGTCCGGTGACCGTGGCCACGCGCAAGAAGTGTCCCGCCTGCCGCTTCGACAAGTGTTTAAATATGGGCATGAAGCTCGAGGCGATCAGGGAGGACAGGACTCGCGGTGGTCGCAGCACTTATCAGTGCACCTACACTCTGCCCGCGAATCTGATGGGCGGCTCCGCCGGGCCCGGCGGTATGCCCGGACAAGATAAGATGGGCCAGGGCCCGTGCAGCCCAGCGCCACCCGGCGCCGAGCATCATCACTCTATCAAGCACCACTCGAATCATTCCCACAAGATGCAGGTGGTGCCGCAGCTGCTGCAGGACATTATGGACGTAGAGCACCTCTGGCACTATAATGACAACGACAGGGTCGGAGCTAGCCAGGCCATGGGTTCGCTCAATCTCTCTCAGTCCTTGCCCGGCTCTGGAATGGACAACAGTCCGAGCGGCAACAGCAGCAGCGGTGACTCCCTTAGCGGCCTGAGCGCGTCAAACGGCCTTGGAAGCGGCACCTCCGGCAGCAGCGTGACCAGCAACGGCAACCTCAACTCCCGCACCGATCCTACACGTCCGACTTCCTCCAATTCATCGACACCCACACCCTCGCTGGATCAGCAACAACATTCACCGCCGCCCGCGAGCTCGAGTAGCTCGGCTAACGGCAATCCTACCCAACACCCAGACTTTCTGTCAAATCTGTGCAATATAGCTGACCATCGGCTCTACAAGATCGTCAAGTGGTGCAAGAGTCTGCCGCTCTTCAAAAACATCTCGATCGACGATCAGATCTGCCTGCTGATTAACTCCTGGTGCGAGCTGCTGCTGTTCTCTTGCTGCTTCCGTAGTATGAGCACGCCTGGCGAGATCAGGGTGTCTCTTGGCAAGAGTATCACGCTGGAGCAGGCTAGGCAGCTGGGCCTGGCCACTTGCATCGAGAGGATGCTTGCATTTACAAATAATCTCAGGCGACTCAGGGTCGATCAGTATGAATATGTAGCCATGAagGTGATTGTACTTCTGACGTCTGATACAAGCGAGCTAAAGGAGCCAGAAAAAGTACGTGCTTCTCAGGAAAAAGCTCTACAGGCGTTGCAACAGTACACAATTGCCAGGTATCCTGAAATGCCGGCAAAGTTCGGTGAACTTCTGCTCAGGATTCCAGATCTCCAACGCACCTGTCAGGCTGGAAAAGAACTGCTGACCGCAAAGCGTGCAGAAGGTGAGGGCTGCTCCTTCAACCTTCTCATGGAACTGCTTCGAGGGGACCACTAA
Protein Sequence
MEGVQVCSSSPGPQEQKFPIKPEPDFRSSPGLQSLGGGNGSLNETIVAVPHVQQLHHQHPQAQQQQSIEQSQQNDLPLLVDKLLGGCNSSTPNHSPVLIPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAGRHSALGPGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQRHAHHHQQQHQVQPLHLQGHHYSAGAGVVGDVGEGHADDQDDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGACCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLMGGSAGPGGMPGQDKMGQGPCSPAPPGAEHHHSIKHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRVGASQAMGSLNLSQSLPGSGMDNSPSGNSSSGDSLSGLSASNGLGSGTSGSSVTSNGNLNSRTDPTRPTSSNSSTPTPSLDQQQHSPPPASSSSSANGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLTAKRAEGEGCSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00079965;
90% Identity
iTF_00691119;
80% Identity
iTF_00691119;