Emex009424.1
Basic Information
- Insect
- Eufriesea mexicana
- Gene Symbol
- PAXBP1
- Assembly
- GCA_001483705.1
- Location
- NW:62687-64033[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-22 1.9e-18 66.2 0.5 72 272 6 174 2 176 0.91 2 2 0.61 2e+03 -2.8 0.0 137 148 220 231 200 247 0.45
Sequence Information
- Coding Sequence
- ATGATTTGTACatcatataaaaatacacaGAGAAAATCGGATATAGAAAGAACAAAGTGGTATAATACATTACTCCTATATgcattaaataataaagaaacagAGGAGTCACTTAAAAGAGATCCAGATGTTAGACTAGTGCCATTTACAGTGGAAAAAATTGTTATACCTAGATTAACATCTATAGTAGAGAGAATATGGGATCCAATGTCTACATCACAAACTTTGCGACTTGTAGGCACAGTAAATCGTCTTATTAGAGAATATCCAAATTTAAATGAGTCAAGCAAACCACTAGAAACATTATTTAATGCTATATTGGACAAAATTAAATCAGCAGTTGAAAACGATGTTTTTATACCAATTTTTCCAAAGCAAGTTTTGGATACCAAGCATCAATTTTTTCAAAGACAATTTGCAATGGCTGTGAAGCTTTTAAGAAATCTATTAAGCTGGCAGGGTCTTCTTGGAGACacacaattaaaaaatttagctCTTGGTTCATTATTAAATCGATATCTTTTGGCAGGTTTAAGAGTGTCTGTTCCAAATGATGCTTTATTTAAAGCAAATATGGTAATGAGTACACTTCCTCGTGCATGGTTGCAAGGTGAAACAATAGAGCATCTGAGAATGTTTGCTACGCTCATTCAACAACTCAGTGAACAATTAGATCAAGCAAATCCAGCACATAACGAAGCCTGGGAATATTCGAAGTCCATCCTGAAAATAATCAAACCTTTgtaa
- Protein Sequence
- MICTSYKNTQRKSDIERTKWYNTLLLYALNNKETEESLKRDPDVRLVPFTVEKIVIPRLTSIVERIWDPMSTSQTLRLVGTVNRLIREYPNLNESSKPLETLFNAILDKIKSAVENDVFIPIFPKQVLDTKHQFFQRQFAMAVKLLRNLLSWQGLLGDTQLKNLALGSLLNRYLLAGLRVSVPNDALFKANMVMSTLPRAWLQGETIEHLRMFATLIQQLSEQLDQANPAHNEAWEYSKSILKIIKPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00089541;
- 90% Identity
- -
- 80% Identity
- -