Etru024901.1
Basic Information
- Insect
- Eudonia truncicolella
- Gene Symbol
- -
- Assembly
- GCA_949315975.1
- Location
- OX438852.1:6739756-6742113[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.8e-06 0.00024 22.0 4.1 1 23 8 31 8 31 0.95 2 21 0.00091 0.079 14.1 0.4 2 23 37 59 36 59 0.94 3 21 1.7e-05 0.0015 19.5 0.1 2 23 68 90 68 90 0.97 4 21 4.6e-06 0.0004 21.3 1.4 2 23 99 121 98 121 0.95 5 21 6.8e-06 0.00059 20.8 1.5 2 23 129 151 129 151 0.94 6 21 2.6e-05 0.0022 19.0 3.1 2 23 160 182 159 182 0.95 7 21 3e-07 2.6e-05 25.0 0.9 1 23 188 211 188 211 0.98 8 21 0.032 2.8 9.2 0.5 1 23 219 242 219 242 0.90 9 21 0.025 2.2 9.6 0.2 1 23 262 285 262 285 0.95 10 21 1.1e-05 0.00095 20.1 0.5 1 23 311 334 311 334 0.98 11 21 0.22 19 6.6 1.1 2 21 342 361 341 362 0.93 12 21 0.017 1.5 10.1 2.2 2 23 371 393 371 393 0.95 13 21 0.0046 0.4 11.9 6.9 1 23 415 438 415 438 0.96 14 21 6.1e-05 0.0053 17.8 1.0 2 23 445 467 444 467 0.96 15 21 3e-05 0.0026 18.8 2.2 2 23 473 495 472 495 0.94 16 21 0.007 0.61 11.3 2.2 1 23 501 524 501 524 0.97 17 21 0.18 15 6.9 7.1 2 23 532 554 532 554 0.95 18 21 0.00028 0.024 15.7 0.2 1 23 561 584 561 584 0.97 19 21 0.0023 0.2 12.8 2.2 1 23 591 614 591 614 0.94 20 21 0.0059 0.52 11.5 3.7 3 23 628 650 626 650 0.92 21 21 2.3 2e+02 3.4 0.6 1 13 700 712 700 718 0.75
Sequence Information
- Coding Sequence
- ATGTACCAGAACCTCTTGGACTACGTTTGCGATTACTGCAGCCGTACATTCACGAGAAAATACAACCTCCAGACTCATATAGAGAATTGTCATATAAATGTTTCATGCTACTGCGAAATATGCGACCAGAAGTTTGGGAGCCCGGCCGGCTTGCAATTGCACCTCACGAGAGGTCACAACAGGTTTGCCCAACCGTTCCCAGAATGCGATATCTGTGGACGCATATTCACAAGGAAACAGAATATCGTATCGCATATGATCACAGTCCATTTGCAAGGCGTTGGGCCAGAAATTAAGTGTTCTATGTgtgaaaaatcttttaccaCTGAAAGGAATTTGAAACGACATGTCAATCAACTCCACAATCCTGATGTCGAGTACCCTTCTTGTGATAATTGTAACAAAGTGTTCAAAAGCAAGCATTCTTTGATAGCGCATATGCAAGCGATGCATAATGTAGCAGAAAAGGGGATAACAAAATGTCATCTATGTGAAAAGGTCTACACGAATAATAGAAACTTAAAAAGGCACGTTGAAATGTTTCATGGCGAGAGGGGCGAATTTCGATGCGAAATATGCCCTAAAGTTTATACGTCAAATCAGAGTTTACGCAGGCATGTGAGAACTAGCCATTATTCTGACGATGGTGATTTGTACGCATGCGAATATTGCGACAAGAATATACCGGGTAGAGAAAATTTACACAGCCATGTCGCTTTCTTTCATAAACATTACAACAATATGGAATACTACGATGATGTTTACCAAAGCAAAGTGGATTACTATCCTTGCGGCTCTTGCCAGAAATCGTTCGGTGAAGAGCTCACTTTAAGACAACACGTGAAGTTAGAGCATTCGTTTAAGACTTTCTACAAATACTGCAAAAAGTCTTTGTTGAAACATGAGGAAGTGAAGGTTAAAAGTTTGTCCTACAGATGCGAGTTTTGCAACATCACTTTTGCCAGTGTTTACGAATTGAAAGATCATATGCGAATTAATCACGACCGAGAGTATTCAATGTCAACTTGCAATGTCTGTTTCAATAAGTTTTATACTAAGGAAACAATGGTTAAACATAAAAAGGTCTGCATTCCACCCGCTGACGTTAACTCTTGCAGCCATTGCGACAAGCTGTTTACAGATATATCCAGCTTAGAGTTTCATACGAGAATTTTCCACCCTCAGTCCCAGATAGCAGATTCCAATATAACTTCAACCAACATCGATGATAACATCGATAATTATAAGTGCACACATTGTGATAGGGTGTACTATAGTGATAGATCTTTAAAACATCACACAAAATTGAAACACACAACAGACGAAGCGAAGGAATGTGAGTTTTGCGGAAAAATTTGCagcaacaaatattatttagcGTCGCACATTAAAATAGTGCATAACGATTCTTGGTCCAAATGTGATTACTGTGATAAGCAATTCAAGTCTAAAAGAAATATAAGAAGACATATAGAATACACGCATTTGGGCATGCAAAGATACAAGTGTATTGAATGCGAAACGTTGTTTAAGGAAAAGAGGAGCTTGAGAAAACATGTCAGGACAAAACATCCCAATTCGGTTGTATTCCCCCAATGTCATATATGCCATAAACGATTCGAATCAGCAAAGTCCTGTAAGATACATTTGAAACTGTTACATTCTTTTAATATGAACACGTTTCCCTGCGATTTGTGTTCTGTCTCGTTCAACTCGAACGAAGCGCTTTCCATACATTTGCAGACAAAACATTTAGCTAAAGACGAAATATATAAATGTGAGGAATGCAACCTAGTCTTCAAAGGGCAGGAGAAGTTTGAGCAGCACAAAGATATTTGTCACGTCAGCCTGGTTCCTAACATTAAACAGAAGATGCTGCCTTGTTGCATTATATGTATGAAGAACTTTAGCACTCGCAAGACTTTGAAAAGGCATATTAAAAAGTTCCATGAGGAATTTGATGTGGATGAATTGGCTACTTTTGGGTCCCGACGACGCATTTTCAACGTGGATTGTGATAATTGTATTAAACATTTAACTGATGGTCACCACTTTAGTGTGTatcagaagtcgaaacatttgAGAGACTTCGTAATATTTAAATGCAAGACGTGCTCGGTTTCCTATAATACGTTGGAATATCATATCCAACGTTACAAATTGACAAACGACAGTTTTAAAGGGAAAATAATTCTGAGCGATTTGTGCACTGCCGAAATGAGTGATGAGGAATCGTACGGTGGTTTTGGATCGTTCCACGATTATATGGAACCGGAAAGCACAACTTGTGAAACTATTAAAGTCGAATCGTGTGAGCCCAATGATGTTATGTATGAGGTTAAGACTGAGTCGCCTTAA
- Protein Sequence
- MYQNLLDYVCDYCSRTFTRKYNLQTHIENCHINVSCYCEICDQKFGSPAGLQLHLTRGHNRFAQPFPECDICGRIFTRKQNIVSHMITVHLQGVGPEIKCSMCEKSFTTERNLKRHVNQLHNPDVEYPSCDNCNKVFKSKHSLIAHMQAMHNVAEKGITKCHLCEKVYTNNRNLKRHVEMFHGERGEFRCEICPKVYTSNQSLRRHVRTSHYSDDGDLYACEYCDKNIPGRENLHSHVAFFHKHYNNMEYYDDVYQSKVDYYPCGSCQKSFGEELTLRQHVKLEHSFKTFYKYCKKSLLKHEEVKVKSLSYRCEFCNITFASVYELKDHMRINHDREYSMSTCNVCFNKFYTKETMVKHKKVCIPPADVNSCSHCDKLFTDISSLEFHTRIFHPQSQIADSNITSTNIDDNIDNYKCTHCDRVYYSDRSLKHHTKLKHTTDEAKECEFCGKICSNKYYLASHIKIVHNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSVVFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFNSNEALSIHLQTKHLAKDEIYKCEECNLVFKGQEKFEQHKDICHVSLVPNIKQKMLPCCIICMKNFSTRKTLKRHIKKFHEEFDVDELATFGSRRRIFNVDCDNCIKHLTDGHHFSVYQKSKHLRDFVIFKCKTCSVSYNTLEYHIQRYKLTNDSFKGKIILSDLCTAEMSDEESYGGFGSFHDYMEPESTTCETIKVESCEPNDVMYEVKTESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00682658; iTF_01335247;
- 90% Identity
- iTF_00682658;
- 80% Identity
- -