Samb077366.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992525.1:5525885-5528257[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 8.4e-07 0.0002 23.8 2.2 1 23 12 35 12 35 0.95 2 21 0.0015 0.36 13.6 1.3 2 23 41 63 40 63 0.95 3 21 0.0021 0.51 13.2 0.2 2 23 72 94 72 94 0.96 4 21 7e-07 0.00017 24.1 1.8 2 23 103 125 102 125 0.95 5 21 5.8e-06 0.0014 21.2 2.3 3 23 134 155 133 155 0.95 6 21 1.5e-05 0.0036 19.9 3.6 2 23 164 186 163 186 0.95 7 21 1e-06 0.00025 23.6 0.9 1 23 192 215 192 215 0.98 8 21 0.0026 0.64 12.9 0.2 1 23 223 246 223 246 0.93 9 21 0.0012 0.3 13.9 0.5 1 23 267 290 267 290 0.95 10 21 4.1e-05 0.01 18.5 0.5 1 23 316 339 316 339 0.98 11 21 0.78 1.9e+02 5.1 0.6 2 21 347 366 346 367 0.92 12 21 0.0064 1.6 11.6 0.8 2 23 376 398 376 398 0.95 13 21 0.00044 0.11 15.3 4.5 1 23 420 443 420 443 0.97 14 21 1.4e-05 0.0035 20.0 0.9 2 23 450 472 449 472 0.96 15 21 0.00012 0.03 17.1 2.2 2 23 478 500 477 500 0.94 16 21 0.0081 2 11.3 2.2 1 23 506 529 506 529 0.97 17 21 0.92 2.3e+02 4.8 6.7 2 23 537 559 537 559 0.95 18 21 0.00033 0.08 15.7 0.2 1 23 566 589 566 589 0.97 19 21 0.035 8.7 9.3 4.2 1 22 596 617 596 619 0.90 20 21 0.019 4.6 10.1 2.7 3 23 634 655 633 655 0.91 21 21 6.5 1.6e+03 2.2 0.1 2 16 676 690 675 692 0.87
Sequence Information
- Coding Sequence
- ATGGCATCTACGATGTACCAAAGTCTATTGGACTACGTCTGCGATTACTGCAGTCGTACGTTTACCAGGAAATATAATTTGCAGACCCATATTGAGAACTTCCACATAAACTCTTCGTGctactgcgaaatctgtgatcaGCAATTCGGCAGTCCCGCTGGATTGCACCAACATCTAAAGAGAGGCCACAACCGCTTCGCACAACCCTTTCCGGAATGCGATTTGTGCGCTCGAatattcacaagaaaacagaaTATAGTCTCCCACATGATTACAGTACATTTGCAAGGCGTTGGACCCGAAATAAAGTGCTCTATGTGTGATAGAACTTTTACCACAGAGAGAAATTTGAAACGACACATGAATCAATTACACAATCCCGATGTAGAGTACTCTGCTTGCGACTACTGTCACAAAGTTTTTAAAAGCAAGCATTCTTTAATAGCACACATGCAAGCGATGCATAATGTATCAGAGAAGGGTATAATTAAGTGTCACCTGTGCAATAAGGTATACACCAACAACAGAAACTTAAAAAGACATACTGAAATGTTTCATGGAGAAAGGGGGGAATTCAGATGCGAGATATGCCCGAAGATCTATACATCGAATCAGAGTTTAAGGAGACATGTGAGAACTAGCCACTATTCGGAAGACTGTGATGTGTACTCTTGTGAGTATTGTGATAAGAATATAGCTGGTAGAGATAATTTAGACAGGCACATTGCTTTTTTTCATCAACATTACAACAACAGTATGGATTACTGCGATGATGTTTCTTTAAGCAAAGTGGACTTCCATTCTTGCTCGTCTTGTCCGATATCATTCAGTGATGAACCGTCACTAAGACAGCACGTAAAGTTAGAACATTCGTTCAAAACTTTCTACAAATACTGCAGGAAGTCATTGTTGAAACAGGAAGATATGAGAGTTAAAAGCTCGTTTTACCGATGCGAGTTTTGTAATATCACTTTTGGTAGTGTATACGAGTTAAAAGATCATATGCGAATCAACCATGATCGAGAATATTCTTTATCGACGtgcaatgtttgttttaacaaatTTTATACAAAAGAAACTATGGTCGATCACAAAAAGGTTTGCATTCCACCCGCGGATGTTAATACCTGCAGTTATTGCGACAAATTGTTTACAGATATTTCTAGCTTAGAATTCCACACAAGAATATTTCACCCTCAATCGCAAATAGCAGATTCTAATATAACATCTACCAACATTGATGATAACGTAGACAATTATAAATGTACGCAATGCGATCGGGTGTATTATAGCGACAGATCTCTAAAACATCACATGAAATTGAAACATACAACAGACGAAGCGAAGGAGTGTGAGTATTGCGGAAAAATTTGTAGCAACAAATACTATTTAGCTTCGCATATTAAAATAGTGCATAACGACTCGTGGTCCAAATGTGATTACTGTGAGAAACAGTTTAAATCCAAACGGAATATAAGAAGGCACATTGAATACACACATTTGGGTATGCAGAGATACAAGTGTATTGAATGCGAAACTTTGTTTAAAGAAAAGAGGAGCCTAAGAAAGCATGTGAGAACAAAGCATCCAAATTCAGTAGTATTCCCACAGTGTCATATATGCCATACAAGATTCGAATCAGCTAAATCGTGCAAGATACATCTGAAGCTGCTTCACTCTTTCAACATGAACACTTTTCCCTGCGATTTGTGCTCTGTCTCTTTCAACTCGAACGAAGCTCTGTCCATACATCTGCAGACGAAACATTTGGCCAAAGATGAAATTTACAAATGTGAGGAATGCAACCTAGTTTTTAAGGGGCAGGAGAAATTTGAGCAACACAACGAACATTGCCACGTAAACTTTGTTCCTAACATAAAACAGAAGATGTTACCTCGTTGTATTATTTGTATGAAAGACTTTAGCACTCGTAAAACGCTGAAGAGGCATATCAAAAAGTTTCACGACGAATTCGATGTGGACGAGTTGGCTACTTTCGGTTCGCGTCGGCGCATTATCAACGTCGAATGTGAGGACTGTATTAAACATTTCACCGACGACCATAATTTCATTGTGTACCAGAAATCGAAGCACTTGAGAGATTCCGTGATTTTCAAATGCGAAACGTGTCTAGTGTCGTACAACACGTTGGAATATTACGTGCAACGTTACAAGATGACAAACGACAGCTTCAAAGGGAATACTATCTTGAGCGACCTGTGCACCGCGGAAATGAGTGACGACGAATCGTATTGTGGCTTTGGGTCGTTTCACGATTTCATGGAACCGGAAAGTACAACTTGTGATAATATAAAACTGGAAACGCTAGACGTTGATGATAGTATGAATGAGGTTACGACAGAATCGGCTTAA
- Protein Sequence
- MASTMYQSLLDYVCDYCSRTFTRKYNLQTHIENFHINSSCYCEICDQQFGSPAGLHQHLKRGHNRFAQPFPECDLCARIFTRKQNIVSHMITVHLQGVGPEIKCSMCDRTFTTERNLKRHMNQLHNPDVEYSACDYCHKVFKSKHSLIAHMQAMHNVSEKGIIKCHLCNKVYTNNRNLKRHTEMFHGERGEFRCEICPKIYTSNQSLRRHVRTSHYSEDCDVYSCEYCDKNIAGRDNLDRHIAFFHQHYNNSMDYCDDVSLSKVDFHSCSSCPISFSDEPSLRQHVKLEHSFKTFYKYCRKSLLKQEDMRVKSSFYRCEFCNITFGSVYELKDHMRINHDREYSLSTCNVCFNKFYTKETMVDHKKVCIPPADVNTCSYCDKLFTDISSLEFHTRIFHPQSQIADSNITSTNIDDNVDNYKCTQCDRVYYSDRSLKHHMKLKHTTDEAKECEYCGKICSNKYYLASHIKIVHNDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSVVFPQCHICHTRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFNSNEALSIHLQTKHLAKDEIYKCEECNLVFKGQEKFEQHNEHCHVNFVPNIKQKMLPRCIICMKDFSTRKTLKRHIKKFHDEFDVDELATFGSRRRIINVECEDCIKHFTDDHNFIVYQKSKHLRDSVIFKCETCLVSYNTLEYYVQRYKMTNDSFKGNTILSDLCTAEMSDDESYCGFGSFHDFMEPESTTCDNIKLETLDVDDSMNEVTTESA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00683548;
- 90% Identity
- -
- 80% Identity
- -