Emer037409.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720050.1:9160409-9162775[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 3.1e-06 0.00036 22.0 4.1 1 23 12 35 12 35 0.95 2 21 0.0052 0.6 11.9 0.6 2 23 41 63 40 63 0.92 3 21 2e-05 0.0023 19.5 0.1 2 23 72 94 72 94 0.97 4 21 5.2e-06 0.0006 21.3 1.4 2 23 103 125 102 125 0.95 5 21 3.9e-05 0.0045 18.6 1.0 2 23 133 155 133 155 0.94 6 21 1.6e-05 0.0019 19.7 2.3 2 23 163 185 162 185 0.95 7 21 3.4e-07 3.9e-05 25.0 0.9 1 23 191 214 191 214 0.98 8 21 0.062 7.1 8.5 0.2 1 23 222 245 222 245 0.89 9 21 0.011 1.3 10.9 0.1 1 23 265 288 265 288 0.96 10 21 1.2e-05 0.0014 20.1 0.5 1 23 314 337 314 337 0.98 11 21 0.77 88 5.1 0.8 2 21 345 364 344 365 0.92 12 21 0.019 2.2 10.1 2.2 2 23 374 396 374 396 0.95 13 21 0.011 1.3 10.9 7.4 1 23 418 441 418 441 0.96 14 21 1.5e-05 0.0018 19.8 0.6 2 23 448 470 447 470 0.96 15 21 3.4e-05 0.0039 18.8 2.2 2 23 476 498 475 498 0.94 16 21 0.0079 0.91 11.3 2.2 1 23 504 527 504 527 0.97 17 21 0.2 23 6.9 7.1 2 23 535 557 535 557 0.95 18 21 0.00032 0.036 15.7 0.2 1 23 564 587 564 587 0.97 19 21 0.0044 0.5 12.1 2.7 1 23 594 617 594 617 0.94 20 21 0.019 2.2 10.1 2.4 3 23 632 653 631 653 0.90 21 21 4.6 5.2e+02 2.6 1.0 1 13 703 715 703 718 0.87
Sequence Information
- Coding Sequence
- ATGTCGTCAATGATGTACCAGAACCTCTTGGACTACGTTTGCGATTACTGCAGTCGTACATTCACGAGGAAATACAACCTACAGACTCATATAGAGAATTGTCATATAAATGCTTCATGCTACTGCGAAATATGCGACCAGAAGTTTGGGAGCCCGGCCGGCTTGCAATTGCACTTCACGAGAGGTCACAACAGGTTTGCCCAACCGTTCCCAGAATGCGATATTTGTGGACGCATATTCACAAGGAAACAGAATATCGTGTCGCATATGATCACAGTCCATTTGCAAGGCGTTGGGCCAGAAATTAAGTGTTCTATGTgtgaaaaatcttttaccaCTGAAAGGAATTTGAAACGACATGTCAATCAGCTCCACAATCCTGATGTCGAGTACCCTTCTTGTGATAATTGTAACAAAGTGTTCAAAGGCAAGCATTCTTTGATAGCGCATATGCAAGCGATGCATAATGTAGCAGAAAAGGGGATAAAATGTCATCTATGTGAAAAAGTGTACACGaataatagaaatttaaaaaggCACGTTGAAATGTTTCATGGCGAGAGGGGCGAATTTCGATGCGAAATTTGCCCGAAAGTTTATACGTCAAATCAGAGTTTACGCAGGCATGTGAGAACTAGCCATTATTCTGACGATGGTGATGTGTACGCATGCGAATATTGCGACAAGAATATACCGGGTAGAGATAATTTAGACAGTCATGTCACTTTCTTCCATAAACATTACAACAATATGGAATACTACGATGATGTATATCAAAGCAAAGTGGATTACTATCCTTGCGGGTCTTGCCAGAAATCGTTCGGTGAAGAGCTCTCTTTAAGACAACACGTGAAGATAGAGCATTCGTTTAAGACCTTCTACAAATACTGCAAAAAGTCTTTGTTGAAACATGAGGAAGTGAAGGTTAAAAGTGTGTCCTACAGATGCGAGTTTTGTAACATCACTTTTGCCAGTGTTTACGAATTGAAAGATCATATGCGAATTAATCACGATCGAGAGTATTCAATGTCAACCTGCAATGTCtgtttcaataagttttatacAAAAGAAACAATGCTTGATCATAAAAAAGTATGCATTCCACCCGCTGACGTTAACTCTTGCAGTCATTGCGACAAACTGTTTACAGATATATCCAGTTTAGAGTTTCACACGAGAATTTTCCACCCTCAGTCCCAGATAGCAGATTCCAACATAACTTCAACCAACATCGATGATAACATCGATAATTATAAATGCACACATTGTAATAGGGTGTACTATAGTGATAGATCTTTAAAACATCACACAAAATTGAAACACACAACAGACGAAGCGAAGGAATGTGAGATTTGCGGAAAAATTTGCagcaacaaatattatttagcGTCCCACATTAAAATAGTGCATAATGATTCTTGGTCCAAATGTGATTACTGTGATAAGCAATTCAAGTCTAAAAGGAATATAAGAAGACATATAGAATACACGCATTTGGGCATGCAAAGATACAAGTGTATTGAATGCGAAACGTTGTTTAAGGAAAAGAGAAGCTTGAGAAAGCATGTCAGGACAAAACATCCCAATTCGGTTATATTCCCCCAATGTCACATATGCCATAAACGATTCGAATCAGCAAAATCCTGTAAGATACATTTGAAACTGTTACATTCTTTCAATATGAACACGTTTCCCTGCGATTTGTGTTCTGTCTCGTTCAACTCGAACGAAGCGCTTTCCatacatttacaaacaaaacatttggcTAAAGACGAAATATATAAATGTCAGGAATGCAACCTAGTCTTCAAAGGGCAGGAAAAGTTTGAGCAGCATAAAGATGTTTGCCACGTCAACCTTGTTCCTAACATTAAACAGAAGATGCTGCCTCGTTGCATTATATGTATGAAGGACTTTAGCACTCGCAAGACTTTGAAAAGGCATATCAACAAGTTCCATGAGGAATTTGATGTGGATGAATTGACTAATTTTGGGTCTCGACGACGCATTTTCAACGTGGATTGTGATGattgtattaaacatttaaCTGATGATCACCACTTTAGCGTGTATCAGAAGTCGAAGCATTTGAGAGACTTCGTAATATTTAAATGCAAGACGTGTTCGGTTTCCTATAATACGTTGGAGTATCATGTCCAACGTTACAAATTGACAAACGACAGTTTTAAAGGGAAAATAATTCTGAGCGATTTGTGCACTGCCGAAATGAGTGACGAGGAATCGTACGGTGGTTTTGGATCGTTCCACGATTATATGGAACCGGAAAGCACAACTTGTGTAACAATTAAAGTAGAACCGTGGGAGCCCAATGATGTTATGTATGAGGGTAAGACTGAGTCGCCTTAA
- Protein Sequence
- MSSMMYQNLLDYVCDYCSRTFTRKYNLQTHIENCHINASCYCEICDQKFGSPAGLQLHFTRGHNRFAQPFPECDICGRIFTRKQNIVSHMITVHLQGVGPEIKCSMCEKSFTTERNLKRHVNQLHNPDVEYPSCDNCNKVFKGKHSLIAHMQAMHNVAEKGIKCHLCEKVYTNNRNLKRHVEMFHGERGEFRCEICPKVYTSNQSLRRHVRTSHYSDDGDVYACEYCDKNIPGRDNLDSHVTFFHKHYNNMEYYDDVYQSKVDYYPCGSCQKSFGEELSLRQHVKIEHSFKTFYKYCKKSLLKHEEVKVKSVSYRCEFCNITFASVYELKDHMRINHDREYSMSTCNVCFNKFYTKETMLDHKKVCIPPADVNSCSHCDKLFTDISSLEFHTRIFHPQSQIADSNITSTNIDDNIDNYKCTHCNRVYYSDRSLKHHTKLKHTTDEAKECEICGKICSNKYYLASHIKIVHNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSVIFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFNSNEALSIHLQTKHLAKDEIYKCQECNLVFKGQEKFEQHKDVCHVNLVPNIKQKMLPRCIICMKDFSTRKTLKRHINKFHEEFDVDELTNFGSRRRIFNVDCDDCIKHLTDDHHFSVYQKSKHLRDFVIFKCKTCSVSYNTLEYHVQRYKLTNDSFKGKIILSDLCTAEMSDEESYGGFGSFHDYMEPESTTCVTIKVEPWEPNDVMYEGKTESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00683548;
- 90% Identity
- iTF_00683548;
- 80% Identity
- -