Epro001730.1
Basic Information
- Insect
- Eudemis profundana
- Gene Symbol
- -
- Assembly
- GCA_947034915.1
- Location
- CAMQQJ010000016.1:861845-872628[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.5 1.2e+02 4.7 0.1 1 23 116 138 116 138 0.92 2 15 0.0027 0.22 13.3 2.7 1 23 279 301 279 301 0.99 3 15 8.5e-05 0.0069 18.0 0.3 1 23 307 330 307 330 0.96 4 15 0.0013 0.1 14.3 4.2 1 23 335 358 335 358 0.94 5 15 0.00089 0.072 14.8 2.5 2 23 523 544 522 544 0.97 6 15 7.1e-05 0.0057 18.3 2.4 1 23 550 572 550 572 0.98 7 15 0.31 25 6.8 4.6 1 23 630 652 630 652 0.96 8 15 4.4 3.5e+02 3.2 0.0 2 23 660 681 659 681 0.95 9 15 0.006 0.48 12.2 1.6 1 23 687 709 687 709 0.95 10 15 0.0004 0.032 15.9 1.2 1 23 715 737 715 737 0.96 11 15 0.00059 0.048 15.4 3.0 1 23 746 768 746 768 0.99 12 15 0.00021 0.017 16.8 0.6 2 23 815 836 815 836 0.97 13 15 0.049 3.9 9.3 6.2 1 23 853 875 853 875 0.95 14 15 1.9e-06 0.00016 23.2 0.7 1 23 881 903 881 903 0.98 15 15 9e-07 7.2e-05 24.2 3.1 1 23 909 932 909 932 0.98
Sequence Information
- Coding Sequence
- ATGGACCACCACATGGCGGAAATGGACCCGCTGAGCACATATGACTATTCGTTCGGTTACCAGCACATGCAATACCCGTACCCGTACGAAATAAAGCTAGAACAACCATTGTCCCACTATGCTAACTTAGCCAGCAACTTACACCAAACGAACCAGCAACCAACCAACGAAATACCTCCAAACGTTCCAGAGACAGTCAACGATACACCGTTACCTGTTAACCCGACGAGCAGTCAAGAGAATAGTGATGTTAAACCAGTCTTTGACTTAAATAAGGTTAAAAAAGAAGGCGGAAAGAAGAGCAGCTATTGGTCGCAGAAGATAACTGATGAAAACTTCCCGTTCTACGCTTGTGCTCTATGTAACGTCAGCTACAAACTACTTAGAGACTTAGATTCGCATCTAGTCGACCACAAAGAGAGACTAACTAGCTATGACTTGCGTATGAagaacaaattaaaaaagaagcAGCTAAAGAAGGAACAGAAGAAGCTAAAGAAGTTAAAAAAAGAAGTAAAACAAGAGGAGATCGAAATCAAACCGGAGGACGGTTACATTGGCAATGAGAAGACAGCGGATTTTGTTGAAAACTCCTTTTTAAACGGAACAACTAATCCCGGAAACATTGAGAATGTTCCGGAAAATGCTGTTCCTGTAAATAATGATGTAAATGTAAATAGAGATAATGTTAATGGGATTAATGATAATGTCCCTGGGAATGTTACTACGAGTGATAATGTAAATAAAAGTGctgataataatttaaataaggACGGGAAAGCTGCGGAGTTGACGGAGAAGGAGGTGGAGTACAATAAGGATTTGGAGAAGATATACAAATGCTTCGCATGTCAGAAGCAGTTCTCTTTGAGTTATTATTTGAAGTTGCATGTGAGATCTCATACAGACGAAAAACCGTATACGTGCGCGGAATGCGGGCAATCCTTCATCACGGCGAGCAAGCTCGGCCGCCACAACAAGCGCATACACCTGGCCATCAAGTACCAGTGCCGGATATGCTACAAGATGTTCACCAGATTCGAGTATCTCACGCGCCATTTTGACAAAAAACACGCGGAGGACAAATTAGATGGGGAGCCATATGaCTACAACGCAATCCTCCCCTACCTCAAGGAGCTGGAAGAGCAACTCCGTGAGAAGGCGGAAGCTGAAGCCAAGCCCAAAACCGAGGAGCTGTGGAGCGAGTGGCCCGAACTGGAGCAGACGCTACCACAGGACCCTAATAAAGATGTCCAGGATAACAAGGACTTCGCACACGCCATGAACCATCTGGATATAGTCATGGATGACGTCAAGGTGCCCGTGGAAGCCATGGAGACGGAGATAGAGATCAAGCTGGAGCGGGAGCCCGACCACGACCAAGACCCCGACCCCGACCACGACCACGACCACCCGCCCGACGACCTGCCCGACCACGACGACGTCAAGGACGAGAGTTTATCAGACGAAGACTACTTCCCCTCCAACACCTGGGCGGAGCCCCCGAAGATGGAGCCGTGCCCCCCGTCGCCCCCCCGCGGCCGCCGCAAGCACGAGGGGCCCCTCACGTGCCAGGTGTGCGACAAGAAGATCAGCACCCACTCCTACATGAGGATACATCTCCGGACACATACCGGAGAGAAGCCTTTCAAGTGCTATATCTGTGGACGAGGGTTCATCACTTCGAGCAAGATGCATAGACATGTGTTGACACACTCCGACTCTTGTGACAAAGATGGCGTCAAAGTGGAAGGAGTGGACGTGAAGGAAGAGGACGACGCGGACCAAGAAGCGGACGCCGAGGGGGATGCTAAATCCAAAAAACCGAAAACTAAGCTAAAAAAGAAGAAACCCGAGAAGAAAAAACGCGACTACCAGAAACGACCGCACGCGTGTGAGTTCTGCCAGAAACGGTTCCTGCACCTCGACATGCTGCAAGTCCACAAGAAGTCCCACGAGGGGGAGAGCGCCAGCCTGAAGTGCTACTACTGTTTGGAGGATGTAGCAGATGAGATGCTGTTGAAGGAGCATGAAGCCACGCACGCGGGGCCCAAGCCGTTCCTGTGCACTTTGTGTGGGAAGGGGTACAAGCGACGGGAGACCATGGTATACCACCGCAAGAACCACAAGTCCGAGAAGAAGTTCATTTGCGACATATGCTCCAAGACGTTCAACGCGCCCTGCAAGTTACAGCGGCACATCGTGAGCCACCGCGCCGACAAGTTCGTGCTGCGCTACGAGTGCCCCGTGTGCGCGCACATGTTCAACACCAAGTACCACGTGCAGATGCATCTCAACACGCACCAGAAGGAAGGCCTAATCCTCGAAGAGAACCGCACCGACATCCTAGCTATGGTGTTGCAAAACGCGCGCAAAATACCGAAACAAGGCGACGCACCCACCAACCTAGCCGACCTCATACCGGCCGACGAGCGAAGCCGGGTTTGCAACATATGCGGGGAAGTTTTCCAACACTTCTATTATTTAGAGGAACACCTCAAAAGCCACGGCTCCCGTATCGCCATCGAAGACGAAAATAAGCAGGAAGAACGCAAACACATATGCCAAGTATGTAACAAGAGCTTTAAACTGCATTACTACCTTAAACTCCACAGCTTTACACACACGAAAGAAAAACCCTACATTTGCCAGCAGTGCGGTAAAGGTTTCATTACTAAAGGGAAGCTTAAGAGGCATTTAGAAACGCACTCCGGCCTGAAGAAGTACCAATGTCACATTTGCTATAAGTTCTTCACGAGACCTAGTTATTTAAGGATCCATGTTAGAACTATTCATGGGAATCAGGATTATAACTTCAGGGTAGGGAAGGAGTTTGGTATAGCGGCGCCGTTGAACGCGTTGTCAGTTATGACGCAGTATAGTGAATAG
- Protein Sequence
- MDHHMAEMDPLSTYDYSFGYQHMQYPYPYEIKLEQPLSHYANLASNLHQTNQQPTNEIPPNVPETVNDTPLPVNPTSSQENSDVKPVFDLNKVKKEGGKKSSYWSQKITDENFPFYACALCNVSYKLLRDLDSHLVDHKERLTSYDLRMKNKLKKKQLKKEQKKLKKLKKEVKQEEIEIKPEDGYIGNEKTADFVENSFLNGTTNPGNIENVPENAVPVNNDVNVNRDNVNGINDNVPGNVTTSDNVNKSADNNLNKDGKAAELTEKEVEYNKDLEKIYKCFACQKQFSLSYYLKLHVRSHTDEKPYTCAECGQSFITASKLGRHNKRIHLAIKYQCRICYKMFTRFEYLTRHFDKKHAEDKLDGEPYDYNAILPYLKELEEQLREKAEAEAKPKTEELWSEWPELEQTLPQDPNKDVQDNKDFAHAMNHLDIVMDDVKVPVEAMETEIEIKLEREPDHDQDPDPDHDHDHPPDDLPDHDDVKDESLSDEDYFPSNTWAEPPKMEPCPPSPPRGRRKHEGPLTCQVCDKKISTHSYMRIHLRTHTGEKPFKCYICGRGFITSSKMHRHVLTHSDSCDKDGVKVEGVDVKEEDDADQEADAEGDAKSKKPKTKLKKKKPEKKKRDYQKRPHACEFCQKRFLHLDMLQVHKKSHEGESASLKCYYCLEDVADEMLLKEHEATHAGPKPFLCTLCGKGYKRRETMVYHRKNHKSEKKFICDICSKTFNAPCKLQRHIVSHRADKFVLRYECPVCAHMFNTKYHVQMHLNTHQKEGLILEENRTDILAMVLQNARKIPKQGDAPTNLADLIPADERSRVCNICGEVFQHFYYLEEHLKSHGSRIAIEDENKQEERKHICQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGNQDYNFRVGKEFGIAAPLNALSVMTQYSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871586; iTF_00773107;
- 90% Identity
- -
- 80% Identity
- -