Lstr038414.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421925.1:9356933-9371590[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6 1.4e+02 4.5 0.1 1 23 115 137 115 137 0.92 2 14 0.00036 0.031 16.0 2.2 1 23 273 295 273 295 0.99 3 14 8e-05 0.0071 18.0 0.3 1 23 301 324 301 324 0.96 4 14 0.0016 0.14 13.9 3.7 1 23 329 352 329 352 0.94 5 14 0.00033 0.029 16.1 2.9 2 23 521 542 520 542 0.97 6 14 0.00061 0.054 15.2 3.1 1 23 548 570 548 570 0.99 7 14 0.44 38 6.3 4.5 1 23 627 649 627 649 0.96 8 14 0.0057 0.5 12.2 1.6 1 23 684 706 684 706 0.95 9 14 0.00037 0.033 15.9 1.2 1 23 712 734 712 734 0.96 10 14 0.0012 0.1 14.3 2.9 1 23 743 765 743 765 0.99 11 14 0.00037 0.032 16.0 0.8 2 23 812 833 812 833 0.97 12 14 0.046 4 9.3 6.2 1 23 850 872 850 872 0.95 13 14 1.8e-06 0.00016 23.2 0.7 1 23 878 900 878 900 0.98 14 14 8.4e-07 7.4e-05 24.2 3.1 1 23 906 929 906 929 0.98
Sequence Information
- Coding Sequence
- ATGGACCAAAATATGTCAGAATTGGACCCGCTCAGCACATATGACTACCCCCCCTACAATTACCAGCCACTCCACTACCCCTACTCCTACGAGATAAAGCTAGAACAACCGCTTGCCCACTACGCTAACATAGCCGCTAACTTAAACCAAACACAACCAGTAAACGAAATACCTCCGCCAGCTCAAGATAACAAAGATACTAGTAATACACAGGAACCAACTAGCAGTCAAGCCCCGGACAAAGAAGAGAAACCAGTATTcgatttaaataaagtaaaaaaagaagGCGGGAAGAAGAGTAACTATTGGTCACAGAAAATAACCGATGAAAATTTCCCATTTTACGCCTGCGCTCTTTGTAATGTTAGCTACAAGCTTTTAAGAGAGTTAGACTCACATCTAGTTGACCATAAAGAAAGACTCACTAGCTATGACTTGcggatgaaaaataaaaagaagaaaaaacagttgaaaaaggaacaaaagaagctgaaaaagttgaaaaaagaaGTGAAGCAAGAAGAGATAGAGATAAAACCGGAAGACGGTTATATCGGGAATGAGAAGGCAGCTGATTTTGTTGAGAATTCATTAGAGACAATAGCGCCAGAAAATGTTACCCAGAATGTAAATGTTAACGATAATGTTAATACTAACAAGAATGATAATGTTACCGATAATGTTAATGTTAACGATACTGTAAATGTTAACAGTGTGAATAGTGaagctgtaaataaaagtgttgataataatgtaaataagcAAGCTGGAGAAGCGGAGAAGGAGGTTGAGTATAATAAGGATTTGGAGAAGATATACAAGTGCTCTGCGTGTAATAAGCAGTTCTCGTTGAGTTATTACTTGAAACTACATGTCAGATCTCATACAGACGAAAAGCCCTACACTTGTGCGGAGTGCGGGCAGTCGTTTATAACGGCGAGCAAACTCGGGCGGCATAACAAACGGATACACCTCGCCATCAAGTACCAGTGTCGGATATGCTACAAGATATTCAcaagGTTCGAGTATCTTACGCGCCACTTCGATAAGAAACATGCTGAAGACAAGCTGGACGGCGAACCATAtgATTACAACGCCATCTTGCCGTATCTCAAAGAACTAGAAGAGCAGTTGCGGGAAAAAGCGGAAGCCGAGAGCAAACCCAAGACCGAGGAGTTGTGGAGCGACTGGCCCGAGATGGAGCAGGCGCTGGTGCAGGACGGAGCTGATGAAGACAAGAAGAACTTCGCCATGAACCATCTCGACATAGTCATGGATGACGTCAAGGTGCCAGTAGAACCGATGGAGACAGTGACGCAGATAGAAATCAAGTTGGAGAGAGAGCCGGACATCGATACCGGCATGGACGACAGTATGCAGGACGACCTACCCGATAATCCCGACGATGTTAAGGACGATGTTAAGGACGATGTCAAGGACGAAAGTTTATCGGACTCGGACTACTTCCCGTCCAACACGTGGGCGGAGCCCCCCAGCATGGAGGCGGCGCCCCCCTCGCCCCCCGCCCGcgggcgccgcgcccgcgccgaggGTCCGCTCACCTGCAAGATCTGCGACAAGAAGATCAGCACCCACTCCTACATGCGCATACATTTGAGGACTCATACCGGGGAGAAACCATACAAGTGCTATATCTGTAGCCGGGGGTTCATAACTTCGAGCAAGATGCACAGGCATGTGCTGACGCACTCCGAATCCTTTGACAAAGATGGAGTGAAAATCGAAGTTGACGTGAAGGAGGAGGGAGACGAAGCGACCAAAGAAGAGGAAGGCGATATGGACACGAAAAAAAAAGGCAAGACGAAAACGAAAAAGAAGAAAGGTGAAAAAAAGAAGCGCGACTACCAAAAACGACCTCACGCCTGCGAGTTCTGTCAAAAGAGATTCCTACACCTGGAGATGCTGCAGGTCCACAAGAAGAGCCATGAAGGGGAGAGTGCGACGCTGAAGTGCTACTATTGCCTGATTGATATAGAGGATGAGAACGGTTTGAAGGAGCACGAAGCCACGCATTCCGGGCCTAAGCCGTTCCTTTGTACGCTGTGCGGGAAGGGGTACAAGCGTAGGGAGACTATGGTATACCATCGCAAAAACCACAAGAGCGAGAAGAAATTCATCTGCGACATATGCTCTAAGACGTTCAATGCGCCGTGCAAACTGCAGCGACACATCGTCAGCCATCGAGCGGACAAATTCGTGCTGCGATACGAGTGTCCCGTCTGCGCGCACATGTTCAATACTAAGTACCATGTGCAAATGCATCTGTCTACACATCAGAAGGAAGGCTTGATCCTCGAGGAGAACCGAAACGACATCCTCGCCATGGTTTTGCAAAACGCGCGAAAAATACCTAAACAGggcGACGCCCCAACCAACCTAGCCGCCCTCATCCCCGCCGACGAACGAAGCCGCGTGTGCAACATATGCGGCGAAATGTTCCAGCACTTCTACTACCTAGAGGAACATCTCAAATCCCACGGCTCAAGGATCGCAATCGAAGACGAAAACAAACAAGAAGAAAGAAAACACATATGCCAAGTATGCAATAAGAGTTTCAAACTACACTATTATCTAAAACTACACAGTTTCACGCACACTAAGGAGAAACCTTACATTTGCCAGCAGTGTGGAAAGGGCTTTATAACGAAAGGAAAACTTAAAAGGCACTTGGAAACGCATTCTGGCCTCAAAAAGTACCAATGTCATATATGTTATAAATTCTTCACTAGACCGAGTTACCTCAGGATACATGTGAGGACTATACATGGGAATCAGGACTATAATTTTAGAGTAGGGGGGTTCAGGGAGGGGAAGGAATTTGGGTTGCCGGCACCGTTATTGCCTGTTATGACGCAATATAGCGAATAA
- Protein Sequence
- MDQNMSELDPLSTYDYPPYNYQPLHYPYSYEIKLEQPLAHYANIAANLNQTQPVNEIPPPAQDNKDTSNTQEPTSSQAPDKEEKPVFDLNKVKKEGGKKSNYWSQKITDENFPFYACALCNVSYKLLRELDSHLVDHKERLTSYDLRMKNKKKKKQLKKEQKKLKKLKKEVKQEEIEIKPEDGYIGNEKAADFVENSLETIAPENVTQNVNVNDNVNTNKNDNVTDNVNVNDTVNVNSVNSEAVNKSVDNNVNKQAGEAEKEVEYNKDLEKIYKCSACNKQFSLSYYLKLHVRSHTDEKPYTCAECGQSFITASKLGRHNKRIHLAIKYQCRICYKIFTRFEYLTRHFDKKHAEDKLDGEPYDYNAILPYLKELEEQLREKAEAESKPKTEELWSDWPEMEQALVQDGADEDKKNFAMNHLDIVMDDVKVPVEPMETVTQIEIKLEREPDIDTGMDDSMQDDLPDNPDDVKDDVKDDVKDESLSDSDYFPSNTWAEPPSMEAAPPSPPARGRRARAEGPLTCKICDKKISTHSYMRIHLRTHTGEKPYKCYICSRGFITSSKMHRHVLTHSESFDKDGVKIEVDVKEEGDEATKEEEGDMDTKKKGKTKTKKKKGEKKKRDYQKRPHACEFCQKRFLHLEMLQVHKKSHEGESATLKCYYCLIDIEDENGLKEHEATHSGPKPFLCTLCGKGYKRRETMVYHRKNHKSEKKFICDICSKTFNAPCKLQRHIVSHRADKFVLRYECPVCAHMFNTKYHVQMHLSTHQKEGLILEENRNDILAMVLQNARKIPKQGDAPTNLAALIPADERSRVCNICGEMFQHFYYLEEHLKSHGSRIAIEDENKQEERKHICQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGNQDYNFRVGGFREGKEFGLPAPLLPVMTQYSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680854;
- 90% Identity
- -
- 80% Identity
- -