Epri100322.1
Basic Information
- Insect
- Euceroptres primus
- Gene Symbol
- PLAGL1
- Assembly
- GCA_037177015.1
- Location
- JBAGKK010505588.1:3241-14401[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.7e-05 0.013 18.1 0.7 2 23 226 247 225 247 0.97 2 11 5.6e-05 0.019 17.6 1.2 1 23 255 278 255 278 0.96 3 11 0.00015 0.053 16.2 2.6 1 23 319 341 319 341 0.98 4 11 5.9e-07 0.0002 23.8 1.8 2 23 381 402 380 402 0.97 5 11 1e-05 0.0035 19.9 0.5 1 23 407 430 407 430 0.96 6 11 2.8e-06 0.00097 21.7 0.4 1 23 469 491 469 491 0.98 7 11 8.1e-07 0.00028 23.3 0.9 1 23 501 523 501 523 0.96 8 11 1e-06 0.00035 23.0 1.4 1 23 529 551 529 551 0.99 9 11 1.2e-05 0.004 19.7 0.2 1 23 557 579 557 579 0.98 10 11 0.002 0.69 12.7 4.2 1 23 585 607 585 607 0.98 11 11 0.0019 0.66 12.7 0.2 1 21 613 633 613 634 0.94
Sequence Information
- Coding Sequence
- GTACAAGAAGGGGATGGATTACCCACAATAATCTGTCTGGAATGCCGTCAACTTGTCGATATATCATACGATTTTAAATGTCAAGTAGAACAGTCGGATGTCAAATTACGACATGCTTTATTATCTAAAGATCTATCTCTAACAcattcgattaataaggtaatAGCAGAAGCTATTTCGGAAGAATTCCCACAGAAAGAAATGTCATGCAATGTTGAAGATCGTAGTCAGCTTCTCAGTGCCATTAGTTCAAAGAGGATTGATCATTTTTCTGTTCTTCCAAATGAACAGTTGGCCACAGCATCTTTaagtaatgaagaaaatataatagggTTTGACATTACTGGCAGTTGTGATCCGAGAAACCAAATTACAAGTGAAACGACGGAGGAAAGtaatattttcagagaaaacGAAAAGGTAGAAATTTTGGAACCACTAAAGGAAGAAAACTCGGCTAGGGTTACGCAGGATATTTTCGAAACACAAGGGGGCTTGGATGGTTCATTCGAAGAGGAATATGTGAAATTAGAGCAAACACAAAATCGTTTGCAATTTACTACtgataatgtagaaaaaacatTGACAATATCGAAAGCCGTCGAAACTGCTACGGAAAATTGTAATGATACTGATGAGGAGGAAACTCCTTTAATATGCAGAACCCAAAGACAAAAATGTCCTCAATGTATAAAGACTTTTCCCACAAAAGTATCATTAGAGAGGCATATGACTATGCataaacaaaaaacgaaacttcGCTATGTCTGTTACATGtgtgataaacaattttcaactgttGAGAAGTTGAAAAATCACTTGCAAAATAGTCACGAAAAGGAGAAAGACAAGGAGAAATCAGCAAATCAAACCAGAACAAAAGTTACGGAAAATGGCAAAAGAACCGAAAGAGCTGACAAAGAAGGGAATTCAGCAGAAAAGAGATCGTTCAAGTTTACTTGCAAAGTTTGTTCCAAACAATTCACTTACCAGAAATCTTTTATAACTCATGCTAAAATTCATACTGAGTGCGATCTAGAAGACATAGTCAGCGAATATTTGCCACCTAAAGTCATGGAGTGTTCAGCCAAAAGTAAAGAGATTGAATCAGAAGATGAAGAAATACTTACGGAAGGTTTACAATGTACAAAATGTGGTAAACTCTTTGCAACTAAGAGAAACCTTAAGCGTCACCTTTTAACTCACACTGGTTTAAAGTACAATTGTCCCATGTGCGGAAAGGAATTCTCGAGAGTAGACAAGTTGAGAGAACATGAACAATCCAAGCATAAAATGGAATTATTCGGCGAATTATCTGACGATGACTTTGATGAGGATACCGATAACGAGAATAAAGTGACAGATCCTACAGAAAATCAGAAAAAGGAGAAGTACAATAGACCACATCAATGCACTCTTTGTCCAAAAGCTTTCGCTCAGCCGCAATCTTTAGCCAACCACATGGAGCGCCACAAACGTGTGAAAGATACTCAGAAACGATTTCTGTGCGAAGTTTGCAGCAAATGTTTCGCTCAAAGTGGTTCACTCGTCGCACACATGCGTACTCATACTGGTGTCAAGCCATACGTCTGTAACGTTTGTACGAAAGCATTTACGAAAAGTACTTATTTACAACTGCATTTGCGAACTCACAGTGGAGAGAAGCCATACATTTGCCAGTATTGTAGTAGAGCATTCGCGCGAGCTAATACTTTGGCAAGACATATAACGATGCATACAGGCGAAGCAAAATACCATTGTCAGATATGTATGAAGTCGTTTAGACGATTGACTTCCCTTAATGAGCATACGTATACTCACACAGGTCAGAGGCCTTACGCGTGTAAGATTTGCGCGAAAAGATATAATAATGCAGGTTCTTTATACGctcatacaaaaaaatgtaaatctcaGCAACAATCAGGTATTGTGCCAACGTACACAGTCAGTACAGAGTCGTTGGATAGCAACATTCAAAACAATGCAGCATCTCAAATGGTTATATACTCTCAAAAGAAGTTAGTAGAAGCAGCCGCCGTGGGTCAAGTTACACCTACACCTCAGTTCATGGTTGCTAATGTTCATAATCAGAAACCGCTGACCACCAATATAATTCAACCTTTCACAGTAGAAGATCCAAATCTTTACGCTATAAATGCAAAGCAGTTTAAGAATTCGTACTATGCAATATACCCTAAtatgtaa
- Protein Sequence
- VQEGDGLPTIICLECRQLVDISYDFKCQVEQSDVKLRHALLSKDLSLTHSINKVIAEAISEEFPQKEMSCNVEDRSQLLSAISSKRIDHFSVLPNEQLATASLSNEENIIGFDITGSCDPRNQITSETTEESNIFRENEKVEILEPLKEENSARVTQDIFETQGGLDGSFEEEYVKLEQTQNRLQFTTDNVEKTLTISKAVETATENCNDTDEEETPLICRTQRQKCPQCIKTFPTKVSLERHMTMHKQKTKLRYVCYMCDKQFSTVEKLKNHLQNSHEKEKDKEKSANQTRTKVTENGKRTERADKEGNSAEKRSFKFTCKVCSKQFTYQKSFITHAKIHTECDLEDIVSEYLPPKVMECSAKSKEIESEDEEILTEGLQCTKCGKLFATKRNLKRHLLTHTGLKYNCPMCGKEFSRVDKLREHEQSKHKMELFGELSDDDFDEDTDNENKVTDPTENQKKEKYNRPHQCTLCPKAFAQPQSLANHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCTKAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICAKRYNNAGSLYAHTKKCKSQQQSGIVPTYTVSTESLDSNIQNNAASQMVIYSQKKLVEAAAVGQVTPTPQFMVANVHNQKPLTTNIIQPFTVEDPNLYAINAKQFKNSYYAIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00089812; iTF_00200988; iTF_00980357; iTF_00064669;
- 90% Identity
- -
- 80% Identity
- -