Btre003362.1
Basic Information
- Insect
- Belonocnema treatae
- Gene Symbol
- PLAGL1
- Assembly
- GCA_010883055.1
- Location
- NC:143701033-143745344[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00027 0.011 15.9 0.2 2 23 282 303 281 303 0.97 2 11 0.00015 0.0058 16.7 1.8 1 23 311 334 311 334 0.96 3 11 0.00023 0.0091 16.1 2.6 1 23 375 397 375 397 0.98 4 11 2.3e-06 9e-05 22.4 1.5 2 23 437 458 436 458 0.97 5 11 1.1e-05 0.00042 20.3 0.5 1 23 463 486 463 486 0.96 6 11 9.8e-05 0.0038 17.2 0.2 1 23 525 547 525 547 0.97 7 11 1.2e-06 4.8e-05 23.2 0.9 1 23 557 579 557 579 0.96 8 11 1.6e-06 6.1e-05 22.9 1.4 1 23 585 607 585 607 0.99 9 11 1.7e-05 0.00068 19.6 0.2 1 23 613 635 613 635 0.98 10 11 0.003 0.12 12.6 4.2 1 23 641 663 641 663 0.98 11 11 0.0029 0.11 12.6 0.2 1 21 669 689 669 690 0.94
Sequence Information
- Coding Sequence
- atggATGTAGAAAACTGCGGAAATCGCATTGTAAATATCAGATCAACCGATCAGGACTCTAACGAACAATGTCggatatgtttaaaatattctacttcTCACTGGGATTTGTTTCGCGATGGTAAAAATATTGCTGGAAAATTGATGACATTTGCTAATGTGCAGGTGCAAGAAGGAGATGGATTACCCACAATCATCTGCCTTAATTGCCGTCATCTTGTTGACTTATCATTCGATTTTAAATGTCAAGTTGAGCAATCGGATACAAAATTACGAAACGCTTTGTTATCTAAAGCTCCAACATTATCACTAACCCATTCGATTAACAAAGTTATAGCAGAAGCTGTATCGGAAGAATTCCCACAGCAAGGCATTCATTGCAATGTTGACAATAATAGTGAGCCTTTTAGTGATATTAGCTCAAGAAACATTGATCATTTTGCCGTTCAGACAAATGAACAGCTAGCTCTAGCATCTTTAAGTAATGCTGAGAGTATGATGACATTTGATATTAGTAAAAGTTGTGATCAAAGAAACCAAAGTACAAGTGCAGTGAAAGCAAGTAATAATTTCAGGGATATTGAGAAGCAAGAGATTTTAGAACAGTTTAAGGAAGATCAGTCGTCTAGGGTTATTCAAGATATTTCGAAAGCTGAAGACAATATTAACACATCCTTCGCAGAGAAATATGTCAAATTGGagcaaattcaaaattatgtggAATTTACTAGTGGTAATGCACAACAAAAATCGGCTTTATCAAAATACGTTGAAATTGCTACAGAGAATTGTAGTGACAGTGACGAAGAGGAAACACCGTTAATATGCAGAACCCAAAGACAAAAATGTCCTCAATGTATAAAAACTTTTCCAACAAAGCTGGCATTAGAGAGGCACATGGCCATGCataaacaaaaaacgaaacttCGCTATGTTTGTTACAGGTGtgacaaacaattttcaactctAGAGAAGCTTAAGAGTCACTTACAAAATAGTCATGAAAAAGAGAAAGATATCGAAAAATCAACTGAGGGTAACCAATCAAAAGGTATAGAAAGTGATAAAAGAACCGACAGTGCTGACAAAGATTACAGTTTAGCAGAAAAGAGGCCGTTCAAATTTACTTGCAAAGTTTGTTCTAAACAATTTACTTATCAGAAATCTTTTATAACTCATGCAAAAATTCACACTGAATGTGATTTAGAAGATATAATTAGCGAGTATTTGCCACATACAGTCTCAGAGAGCTCATCCAAAAGTAAAGAGACTGAATCAGAGGACGAAGAAATCCTTTCAGAAGGTTTACAGTGTACAAAATGTGGTAAACTGTTTGCGACTAAGAGAAATCTTAAGCGTCATCTGGTAACTCACACTGGGTTGAAGTACAGTTGTCCCATGTGCGGAAAAGAATTTTCGAGAATAGATAAATTGAGAGAACATGAACAATCGAaacataaaatagaattatttggcCAATTTTCCGATGATGATAATGACGAGGTTACGGATAATGAGAATAAAATGTCTGACTCTACTGAACGGCGAAAAAAGgaGAAGTACAACCGACCACATCAATGCGCACTTTGTCCAAAGGCTTTTGCGCAACCGCAGTCCCTAGCCAACCACACGGAGCGTCATAAACGGGTCAAAGACACTCAGAAGCGATTCCTGTGCGAAGTTTGTAGCAAATGCTTCGCTCAAAGTGGTTCCCTCGTCGCTCACATGCGCACTCATACCGGTGTTAAACCATACGTTTGCAACGTTTGTACTAAGGCATTTACGAAAAGCACCTACTTACAATTGCATTTACGAACTCATAGTGGAGAAAAACCATATATTTGCCAATACTGCAGCAGAGCTTTCGCCCGAGCTAATACTTTGGCTAGACACATAACGATGCATACAGGTGAAGCAAAATATCATTGTCAGATATGTATGAAGTCTTTTAGGAGATTGACTTCCCTTAACGAGCATACCTATACTCACACCGGTCAGAGGCCTTATGCGTGTAAGATATGCGCAAAAAGATATAATAATGCAGGTTCTTTATATGCTCATACCAAAAAGTGTAAGTCTCAGCAACAATCCGGAGTTGCACCGACGTATGCAGTCAGTACTGAGTCGGCGGATAACAGCATTCAGAACAATGCAGTACCTTCAATGATTCTGTACTCTCATAAGAAGTTAGTAGAAACATCCTCGGTGGGTCAAGTAACGCCTACGTCTCAGTTTATGGTGACCAATGTTAACAATCAGAAATCACTGACCACTAGCATAATTCAACCGTTCACAGTTGAAGACCCAAATCTTTATGCAGTAAACGCAAAGCAGTTTAAGAATTCGTACTATGCAATATATCccaatatttaa
- Protein Sequence
- MDVENCGNRIVNIRSTDQDSNEQCRICLKYSTSHWDLFRDGKNIAGKLMTFANVQVQEGDGLPTIICLNCRHLVDLSFDFKCQVEQSDTKLRNALLSKAPTLSLTHSINKVIAEAVSEEFPQQGIHCNVDNNSEPFSDISSRNIDHFAVQTNEQLALASLSNAESMMTFDISKSCDQRNQSTSAVKASNNFRDIEKQEILEQFKEDQSSRVIQDISKAEDNINTSFAEKYVKLEQIQNYVEFTSGNAQQKSALSKYVEIATENCSDSDEEETPLICRTQRQKCPQCIKTFPTKLALERHMAMHKQKTKLRYVCYRCDKQFSTLEKLKSHLQNSHEKEKDIEKSTEGNQSKGIESDKRTDSADKDYSLAEKRPFKFTCKVCSKQFTYQKSFITHAKIHTECDLEDIISEYLPHTVSESSSKSKETESEDEEILSEGLQCTKCGKLFATKRNLKRHLVTHTGLKYSCPMCGKEFSRIDKLREHEQSKHKIELFGQFSDDDNDEVTDNENKMSDSTERRKKEKYNRPHQCALCPKAFAQPQSLANHTERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCTKAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICAKRYNNAGSLYAHTKKCKSQQQSGVAPTYAVSTESADNSIQNNAVPSMILYSHKKLVETSSVGQVTPTSQFMVTNVNNQKSLTTSIIQPFTVEDPNLYAVNAKQFKNSYYAIYPNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00676978;
- 90% Identity
- -
- 80% Identity
- -