Most034918.1
Basic Information
- Insect
- Melikaiella ostensackeni
- Gene Symbol
- PLAGL1
- Assembly
- GCA_032362435.1
- Location
- JAUMHM010000085.1:63490751-63511439[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00042 0.14 14.9 0.2 2 23 455 476 454 476 0.97 2 11 0.00012 0.038 16.6 1.2 1 23 484 507 484 507 0.96 3 11 0.00023 0.074 15.7 2.6 1 23 548 570 548 570 0.98 4 11 8.6e-07 0.00028 23.4 1.8 2 23 610 631 609 631 0.97 5 11 1.6e-05 0.0053 19.3 0.5 1 23 636 659 636 659 0.96 6 11 3.1e-05 0.01 18.5 0.5 1 23 698 720 698 720 0.97 7 11 1.2e-06 0.00039 22.9 0.9 1 23 730 752 730 752 0.96 8 11 1.5e-06 0.00049 22.6 1.4 1 23 758 780 758 780 0.99 9 11 1.7e-05 0.0055 19.3 0.2 1 23 786 808 786 808 0.98 10 11 0.00033 0.11 15.2 2.5 1 23 814 836 814 836 0.98 11 11 0.0028 0.91 12.3 0.2 1 21 842 862 842 863 0.94
Sequence Information
- Coding Sequence
- ATGTCTGAGACGGGAATCCCCATGATGTGGATGTATTTGCACAACAGCAAAGGAGCCTCGACAGTTCTAGCCAGGCGCATGTCAGTGGTGCAGACAGTGCTTGCCCTAAACCAAGAACCCTGGTCATACCTGAGCTCTGCTCCTGAGACCTCACCGTTATTAAGGGGCTTCTTCGAGGAATCGAAGAGTATTCCGGAAACAGCGAGGCTCCATAAGATCCTGGCAAAGAATCTGGACGCTCGCCTCGGGCTCATAAGGTTCGATAATGGTGAAATTGCCAAAGACGAAGAAGCAACGCTGCATCACTCAATGAAGGTTTACTTTCCGGGCTTTCGGCGAATGAAAACCGACGAAGAGGTGGAGGACTGGGGCCAAGAGAGTGGGAGGGTCGACTGGAACTTCGCCTCTAACGTCGATGATCAGAAGAAGGTGGAATGGGCCATAGGTTCCTTCTGTCCCTTTAAATTACTGGGAGCGGATGGCGTAGTGGCCTTTATTCCAAAACCTGGGAGAGAGGGCTACACTGCTGCGAAAGATTTCCAGCCGATCAGCCTAACGTCTTTTATCCTGAATGCGTTAGAGAAGCTGGTCGAGAGATATATCAGGGATGAGGTGCTTTCAGCCTCTCTGCTGCATAGAGGGAAGGAGGCATGGGAGGAGGGGGATAGGAATCCCGCTTGGGCGGTGCAAGAAGGAGATGGATTACCCACAATCATCTGTCTTAATTGCCGTCATCTTGTCGACATATCATTCGATTTTAAATGTCAAGCAGAGCTATCGGATTCAAAATTACGACAAACTTTGTTATCTAAAGACACAACATTATCACTAACACATTCGATTAACAAAGTTATAGCAGAAGCTATATCGGAAGAATTCTCACAGCAAGACATTTCTTGCAATGTTGAAGATCGTAGTGAGACTCTCAGTGATACTAGCTCAAGAAACATTGATCATTTTGCCGTTCAGCCAAATGAGCAGCTAGCTGTAGCATCTTTGAGTAATGCGGAAGGCGTGATGGCATTTGATATTAGTAGCAGTTGTAATCAAAGAAACCAAAGTACGAGTACAGTGAAAGAAAGTAATAATTACAGGGATGTTGAGAAGCAAGAGATTTCAGAACCCTTTAAGGAGGACCAATCATCTAGGGTTATTCAAGATATTCCAAAAACTGAAGGTAATATTAATACTCCCTTCGAAGAGAAATATGTAAAGGTGGAGCAAAGTCAAAATCATGTGGAATTTACTACTGGTAATATCCAACAAACATCGGCATTATCAAAACACGTTAAAAGTGCTACAGAGAATTGGAGTGACAGTGATGAAGAAGAAACACCGTTAATATGCAGAACCCAAAGACAAAAATGTCCCCAGTGTATAAAAACTTTCCCCACAAGGCTGGCATTAGAGAGGCACATGATCGTGCATAAACAAAAGACGAAACTGCGCTATGTTTGTTACATGtgtgataaacaattttcaactgtagaGAAGCTCAAGAGTCACTTGCAAAATAGTCATGAAAAGGAGAAAGATGTGGAGAAATCAACTGATGCAAACAGATCAAAAGATACAGAAAATGGTAAAAGAAACGAAAGAGCTGACAAAGATAACAGATTTGCAGAAAAGAGACCATTCAAATTTACTTGCAAAGTTTGTTCCAAACAATTCACTTACCAGAAATCTTTCATAACACACGCGAAAATTCACACTGAGTGCGATTTGGAAGATATAATCAGCGAATACTTGCCACCCAAAGCTTCAGAGAGTTCATCCAAACGTAAAGAGACTGAATCAGAGGACGAAGAAGTCCTTTCGGAAGGCTTACAGTGTACAAAATGTGGTAAACTTTTTGCGACTAAGAGAAATCTTAAGCGGCATCTTTTAACTCACACTGGTTTGAAGTATAATTGCCCCATGTgtggaaaagaattttcgagAATAGATAAATTGAGAGAACATGAACAATCGAAAcataaaatagaattatttggcCAATTTTCTGACGATGATAATGATGAGGGTACGGATAATGAGAATAAAATGACCGACTCTACTGAAAACcgaaaaaagGAGAGGTACAACCGACCACATCAATGCACACTTTGTCCAAAGGCTTTTGCGCAGCCGCAGTCTTTAGCCAACCACACGGAGCGTCACAAACGCGTGAAAGACACTCAGAAGCGTTTTCTATGCGAAGTTTGTAGTAAATGCTTCGCTCAAAGTGGTTCTCTCGTCGCTCACATGCGCACTCATACTGGTGTTAAACCATACGTTTGCAACGTTTGTACTAAAGCGTTTACGAAAAGCACTTACTTACAATTGCATTTGCGAACTCACAGTGGagaaaaaccatatatttgccAATACTGCAGCAGAGCTTTCGCGCGAGCTAATACTTTGGCCAGACATATAACGATGCATACAGGCGAAGCAAAATATCGTTGTCAGATATGTATGAAGTCTTTTAGACGCTTGACTTCTCTTAATGAGCATACCTATACTCACACCGGTCAGAGGCCATACGCGTGTAAGATATGCGCGAAAAGATATAATAATGCAGGTTCTTTATATGCTCATACGAAAAAGTGTAAGTCTCAGCAACAATCTGGTGTTGCAGCGACGTATGCAGTCGACACAAAGTCGACGGATAACAACATTCAGAATGATGCAGTTCCTTCGATGATTGTATACTCTCAGAAGAAGTTAGTAGAAACATCAGGGGTGGGTCAAGTAACGCCTACACCTCAGTTTATGGTGGCCAATGTTCATAATGAAAAACCATTGACCACTAACATAATTCAACCTTTCACAGTCGAAGACCCTAATCTTTACACAGTGAATGCAAAGCAGTTTAAGAATTCGTACTATGCAATTTATCCTAATATTTAA
- Protein Sequence
- MSETGIPMMWMYLHNSKGASTVLARRMSVVQTVLALNQEPWSYLSSAPETSPLLRGFFEESKSIPETARLHKILAKNLDARLGLIRFDNGEIAKDEEATLHHSMKVYFPGFRRMKTDEEVEDWGQESGRVDWNFASNVDDQKKVEWAIGSFCPFKLLGADGVVAFIPKPGREGYTAAKDFQPISLTSFILNALEKLVERYIRDEVLSASLLHRGKEAWEEGDRNPAWAVQEGDGLPTIICLNCRHLVDISFDFKCQAELSDSKLRQTLLSKDTTLSLTHSINKVIAEAISEEFSQQDISCNVEDRSETLSDTSSRNIDHFAVQPNEQLAVASLSNAEGVMAFDISSSCNQRNQSTSTVKESNNYRDVEKQEISEPFKEDQSSRVIQDIPKTEGNINTPFEEKYVKVEQSQNHVEFTTGNIQQTSALSKHVKSATENWSDSDEEETPLICRTQRQKCPQCIKTFPTRLALERHMIVHKQKTKLRYVCYMCDKQFSTVEKLKSHLQNSHEKEKDVEKSTDANRSKDTENGKRNERADKDNRFAEKRPFKFTCKVCSKQFTYQKSFITHAKIHTECDLEDIISEYLPPKASESSSKRKETESEDEEVLSEGLQCTKCGKLFATKRNLKRHLLTHTGLKYNCPMCGKEFSRIDKLREHEQSKHKIELFGQFSDDDNDEGTDNENKMTDSTENRKKERYNRPHQCTLCPKAFAQPQSLANHTERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCTKAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYRCQICMKSFRRLTSLNEHTYTHTGQRPYACKICAKRYNNAGSLYAHTKKCKSQQQSGVAATYAVDTKSTDNNIQNDAVPSMIVYSQKKLVETSGVGQVTPTPQFMVANVHNEKPLTTNIIQPFTVEDPNLYTVNAKQFKNSYYAIYPNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00676978;
- 90% Identity
- -
- 80% Identity
- -