Esep008755.1
Basic Information
- Insect
- Eristalinus sepulchralis
- Gene Symbol
- -
- Assembly
- GCA_944738805.1
- Location
- CALYJE010000061.1:3563517-3565010[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 3.8 1.8e+04 -4.0 0.0 26 31 85 90 80 102 0.80 2 8 0.67 3.2e+03 -1.6 0.0 22 43 216 237 211 241 0.79 3 8 0.00026 1.2 9.4 0.1 21 51 243 272 236 273 0.89 4 8 0.0052 25 5.2 0.7 21 45 298 322 277 325 0.86 5 8 0.00034 1.6 9.0 0.1 21 45 326 350 323 359 0.89 6 8 0.012 56 4.1 0.1 18 47 378 408 368 414 0.81 7 8 0.0013 6.1 7.2 0.1 23 46 440 463 436 469 0.87 8 8 0.003 14 6.0 0.1 21 47 466 492 463 495 0.89
Sequence Information
- Coding Sequence
- ATGGCTGGTCAGATGACACAAATGGAATTCTCAGATATGGTCAAGGACGGTACTTGTACTTTTTCAGATTGGCCAGATGAAGAGGAGGAAGACGATGAGCAATATACTGGCATACTCTTGACAGAGGATATGATCAAACAGGAGCCAGAGTTTATAATTGGATCGGATGATGCCGAAGAAGAGCAAAAAATCCGTGCCTTCCTTAATAAAGACACTATCGACGATGAGGAAAGGCAACAGTTGAACTGGCTGACATGTATGATTTGTGACGAACGCTTTTTGTCCACCAAAGAATTGTCGCTGCATGTACAAGAGCACACCAAAACTGCACTTAAGCAAGAGAACGATGAAATGTTGGTTCCACCGAGAGAACTCACAAACCGGCAGGCACCGAAGACCGCTTTTACTGGATTTACTCGCCAGGAGCTCTTCCAGGACTACATTAATATCAGCGTAGAACTAGACGGAAAGCCCACGTACACGTGCAAGTTGTGTCCCAACAAGGTGTATGCAAGACAAATCTCAATCAGAAATCACATGCGCATTCACGAGAATCCAACTTATAAAGAACGTTCATGTCATGTCTGCCACAAGACCTTTCTGCGGCGCGACACGCTCCTCGTACACTTGCGAACCCACACCAATGAAAGAAAATACAAGTGCAACGTTTGCGAGGCATCTTTCACACATTCCAGTTCGCTAGTGTCTCACAAGCGCATACACAGCGGTGAAAAGCCGTACGTCTGCACCATTTGCAGCAAGTCATTCCGCGAGTCTGGCCAGTTAACAGCCCACAAGAAGATCCACTTCGCAAAAGTCTTGCAGTGTCCAAAGTGCGAAAAGAAATTCACCTCTAACAAAACTCTTCGAGTTCACTGTCGAACGCACACCGACGAGCGTCCATACACCTGCTCCTACTGTTCGAAAATGTTTCGCTGCACCACCAGCTTGACCACTCACTTGCGGGTTCATACGGGTGAAAAGCCGTACAAATGTGAAATATGTTCATACGCGACCAAGCAGTCCGGGTACCTCAGAACACACATGCGTACCCACACCGGCGAGCGACCCTACAAGTGTACGTACTGCGAAAAAGCGTTTTCCGAAAAGAAACGACTCGTCACCCACACCCGGAGCCACACCGGGGAACGCCCATACAAATGTATTTACTGCGATTCAGCATTCGCCCGGACGGATAACCTCAAGTACCACCTTCGAACGCATACCGGCGAAAAACCGTACGAATGTGGTGAGTGTGGTAAGCGGTTCGCGCAGGGTACCACGCTCAGTATTCATCAAAAAATCCACACAGGAGTTAAGCCCTATTCTTGCCCACATTGCGCCATGAAGTTTCGACAAAGTGGCACTCTCGTCACACACCTGCTGATGCACACCAATGAAAGGCCATTCAAATGCGATCTCTGCGAGCGAGGATTCCGGCAGAAAGCGCTGCTGAAGCGACATGTTGCCAGTGCTCACGGCACTGTTATGTAA
- Protein Sequence
- MAGQMTQMEFSDMVKDGTCTFSDWPDEEEEDDEQYTGILLTEDMIKQEPEFIIGSDDAEEEQKIRAFLNKDTIDDEERQQLNWLTCMICDERFLSTKELSLHVQEHTKTALKQENDEMLVPPRELTNRQAPKTAFTGFTRQELFQDYINISVELDGKPTYTCKLCPNKVYARQISIRNHMRIHENPTYKERSCHVCHKTFLRRDTLLVHLRTHTNERKYKCNVCEASFTHSSSLVSHKRIHSGEKPYVCTICSKSFRESGQLTAHKKIHFAKVLQCPKCEKKFTSNKTLRVHCRTHTDERPYTCSYCSKMFRCTTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCTYCEKAFSEKKRLVTHTRSHTGERPYKCIYCDSAFARTDNLKYHLRTHTGEKPYECGECGKRFAQGTTLSIHQKIHTGVKPYSCPHCAMKFRQSGTLVTHLLMHTNERPFKCDLCERGFRQKALLKRHVASAHGTVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395957;
- 90% Identity
- iTF_00672345;
- 80% Identity
- iTF_00671710;