Edef005032.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- -
- Assembly
- GCA_905404285.1
- Location
- FR990094.1:5108216-5124492[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.35 31 5.9 1.6 1 23 234 257 234 257 0.89 2 18 0.54 48 5.3 0.0 2 23 283 305 282 305 0.95 3 18 0.0035 0.31 12.2 0.4 1 23 325 347 325 347 0.98 4 18 0.003 0.27 12.4 1.7 1 23 387 409 387 409 0.95 5 18 0.0088 0.78 11.0 0.5 2 23 481 503 480 503 0.96 6 18 0.00067 0.059 14.5 2.1 2 23 509 531 508 531 0.95 7 18 0.012 1.1 10.5 0.4 1 23 536 559 536 559 0.94 8 18 3 2.7e+02 3.0 0.3 2 23 562 584 561 584 0.91 9 18 0.014 1.2 10.4 0.5 2 22 591 611 590 611 0.93 10 18 0.0052 0.46 11.7 0.5 1 23 669 692 669 692 0.92 11 18 3 2.6e+02 3.0 0.0 3 23 721 742 719 742 0.90 12 18 0.049 4.3 8.6 0.2 3 23 766 788 765 788 0.95 13 18 0.00055 0.049 14.7 0.4 3 20 795 812 793 816 0.90 14 18 0.018 1.6 10.0 0.6 1 23 821 844 821 844 0.97 15 18 0.0013 0.11 13.6 0.1 2 23 850 872 850 872 0.92 16 18 4.5e-05 0.004 18.2 4.7 1 23 876 899 876 899 0.97 17 18 0.00019 0.017 16.2 0.6 2 23 906 927 905 927 0.96 18 18 0.0052 0.46 11.7 2.2 1 23 933 955 933 955 0.97
Sequence Information
- Coding Sequence
- ATGAATTTCGACGAGATAGTAGTAAAGGAGAGCCCGGGCATATGCCGGTGCTGTCTATCTGAGGGCTGTTACAAAGACTTGGGCACCGAATATACTTGGATGAACGACACAGAGGTTTATGCTGATATGCTTTTGGATTGCTTCGATATTGGCATCACACAACATAATGATGGGCCGAATGGTGGCAAGCGGCTCATCTGCGAAGTGTGCATCACACGGCTCCGAGACGCGTGCAACTTTAAGAAGCAGGTTGTGGACTCTGAGAAACGCTTTATTGATATGCTTGCCCGCGGAGAGTTTAGGCCTAAAGTGATGTACCAGACGCAGGCCAATATGAAACAGGAAAGGGTAGATGAAATACCTGAGGATATGATGGCAGAAGACGTTGAGTACCTAGAAGACGTGGGTTACGGTGCCGAAGAGGAGGCAGTTAAAATCGAAGTCGTCCAGTCTACGTCCATGGCGTCCACGTCGGAGACCCGGCCCCCCAAGCGCGGCAGGCCCCGAAAGGACGACGACAAACCGGAGAAGGCAAAGAAGCAGAGGCTGGCTAAAGGTAACATAGCAGGGAACACATCGGTCGAGGCAGAGAGTAAGTCCTCACTATCGGCCACCAAACGAAACCGACTCATGAAGAAAAACGCCATAACGCTTCTAGAATGTTCCACTGTTCTCCCTTTCAAGTGGCACCGACAAAACTACCTCTGTTTCTATTGTCATCTCACTCTGAAAACCATGGACGAAGTGAGACGCCACACCACAGCAGAGCACGTAAAACCAAACATAAAATCAGCCGTCTCTTTCTTGAGACGAGATGAAAAAGTCAAAGTTGACGTGTCTTCAATCGAGTGTAGACTTTGCACGCAAACGATTATAGACCTAAACGGTTTGATGGAGCATATCAAAATTGTCCATAATAGAATTTTCAGCGGAGGTGAGAATGGTTTGATACCGTACAGGCTAGACAACGCCTATCAATGTGCCATTTGCGACGCAAACTTCCAGTATTTTATTAAACTAAATCAACATATGAACGAACATTTCGGTGTTAAAACGCGGAAATACAAGGGAACAGAGTCTCTGTCCACGCTTAGAAGGAGAAACCTACAAATTATATTCAACAACACCTCGATAATACCTTTTAAGTGGCGGGGGAAGTATCTCTGCTTTTACTGTAGCAAAGATTTCTCAGAATATGAGGAACTAAGGACACATACTAAACTTCACGGCGATTGTTCTATTCTAGACCATTCGTTAAAAGCTCTTAAAGGTGGCACAAATATGGAAATCAAAATTGACGTCTCAAACTTAGGTTGCATAATATGCTCGGAACAGCATCCTTCTCTAGATGAAATAATCAAACATCTTGAAGCTAAACATAAACTAGAATACGACTTAAACGTAGACATGGCCATAGAAGAATATAGGCTAGTTGATTTGAAATGTCTTAATTGCGAGGAAAAGTTTTCTTACTTTGGATATTTAGTATCGCACGTTAATACAAACCATCCGAAAAACTGCCTCATTTGTGATAAATGCAACCAAAAATTTAATAAGAAACGCGATCTGTTCTCGCATATAAAGAACTATCATCGAGAGGGAGGGTACCAGTGTGAACTCTGTCCTCAGGCTTTCAACTCGCTTAATATACTCCGGAAGCATAGAATTAACAGGCATATGACTCGATGCCATATCTGTCTACTGAGACTACCCTCAGCAGCTTTGAGGCAAAAGCATATAGACTTGGAACATCCTGATGACGGATCTCTTCAATGCGACGCGTGCGACAAAGAATTCCACACGAAACAAGGGTTAAGAATGCATGCGAGAAAATGCAAAGGGGATCTTTTCCAACTGTCTATCAAAAAGGAAGACTACACAATGGATTTGGATTTGAACTACGAGGATCCGGCTAAACGACCGAGCGTGAAGCAAATACGCGAAAACATAGTTATAGTTATCAATATGTCCACTGCCATACCTTTCAACTTCTACAAGAATAAATTCAACTGTTTTTACTGTTCTAAAGACTTCCCCGATTCGGATACTATGAAAGAACATACTGTTGTCGAACATCCCGTGGTTGATGTCCAAGAGAAGTGCATTAAAAAGTGCCGGGAGTCAGTCGCATGCGTCAAAATTGACGTTTCGACGTTAGCCTGCAAGGTTTGCTTTGAAAGCATGCCGAGCTTGGACAGTCTTCTCGATCATCTGATCGCGAAACATGATGCCAACTATGACAAATCGATCACGACATGCTTGCAGCCTTACAAACTGATTAAAGACAACATGGCATGCCCTAACTGCCCTGGTGAAGTGTTCCGCTTCTTTGGCACGTTACTAAAACACATGAATAAAAAGCATACGAATAATAACATCATTTGTGTATATTGCGGTGAAACGTTTCGTCGGGATCAGAATCTAAGAGTTCATATATGGAGACATCACCGGGATGGGCGTTTCAAATGTAGCATTTGCGGCGCAGAGTGTAACATCCCCTCTCGTTTGTACATGCACATGGCGAAATCTCACGGCGTGAAAGCGGCAAAATGTCCGAAGTGTCCGGAAGCGTTTGCGACGCAATATCTTCGTCAGAAGCATTTGATAGACGCTCACAATTCTGGTCATAAATGCTCGTATTGCGGCAAACTGTTCACGAGGAACTCTTTCATGCGTGATCACATTAGGAGAACTCATCTGAAGGAGAAGAATGTGGAATGCTCCGTTTGCAATATGAAGTTCTTTAATAATGTTTTGTTGAGAAGACATATGGTCAAGCATAGCGGGGAGAAGAATTTCCATTGTGAGGTGTGCGGCGAACGATTCTTCTGGCGGAAAAGTTTACGTACGCACATGGCGAGACATACCAAACATTTGCACTCTATTCATATGTAA
- Protein Sequence
- MNFDEIVVKESPGICRCCLSEGCYKDLGTEYTWMNDTEVYADMLLDCFDIGITQHNDGPNGGKRLICEVCITRLRDACNFKKQVVDSEKRFIDMLARGEFRPKVMYQTQANMKQERVDEIPEDMMAEDVEYLEDVGYGAEEEAVKIEVVQSTSMASTSETRPPKRGRPRKDDDKPEKAKKQRLAKGNIAGNTSVEAESKSSLSATKRNRLMKKNAITLLECSTVLPFKWHRQNYLCFYCHLTLKTMDEVRRHTTAEHVKPNIKSAVSFLRRDEKVKVDVSSIECRLCTQTIIDLNGLMEHIKIVHNRIFSGGENGLIPYRLDNAYQCAICDANFQYFIKLNQHMNEHFGVKTRKYKGTESLSTLRRRNLQIIFNNTSIIPFKWRGKYLCFYCSKDFSEYEELRTHTKLHGDCSILDHSLKALKGGTNMEIKIDVSNLGCIICSEQHPSLDEIIKHLEAKHKLEYDLNVDMAIEEYRLVDLKCLNCEEKFSYFGYLVSHVNTNHPKNCLICDKCNQKFNKKRDLFSHIKNYHREGGYQCELCPQAFNSLNILRKHRINRHMTRCHICLLRLPSAALRQKHIDLEHPDDGSLQCDACDKEFHTKQGLRMHARKCKGDLFQLSIKKEDYTMDLDLNYEDPAKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDTMKEHTVVEHPVVDVQEKCIKKCRESVACVKIDVSTLACKVCFESMPSLDSLLDHLIAKHDANYDKSITTCLQPYKLIKDNMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCSICGAECNIPSRLYMHMAKSHGVKAAKCPKCPEAFATQYLRQKHLIDAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNVLLRRHMVKHSGEKNFHCEVCGERFFWRKSLRTHMARHTKHLHSIHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00125320; iTF_00896185;
- 90% Identity
- -
- 80% Identity
- -