Asyr007401.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000073.1:2251835-2270361[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.027 2.2 9.3 1.4 1 23 239 262 239 262 0.95 2 19 0.012 1 10.4 0.0 2 23 288 310 287 310 0.95 3 19 0.0012 0.1 13.6 1.0 1 23 331 353 331 353 0.98 4 19 0.04 3.3 8.8 1.6 1 23 397 419 397 419 0.95 5 19 3.4 2.8e+02 2.7 0.1 6 23 451 469 450 469 0.93 6 19 0.0026 0.21 12.5 0.3 2 23 490 512 489 512 0.95 7 19 0.00066 0.055 14.4 2.7 3 23 519 540 517 540 0.96 8 19 0.0029 0.24 12.3 0.8 1 23 545 568 545 568 0.94 9 19 0.28 23 6.1 0.4 2 23 571 593 570 593 0.93 10 19 0.0011 0.092 13.7 0.6 2 22 600 620 599 620 0.93 11 19 0.006 0.5 11.4 0.6 1 23 677 700 677 700 0.90 12 19 1.8 1.5e+02 3.6 0.1 2 23 728 750 727 750 0.91 13 19 0.045 3.7 8.6 0.2 3 23 774 796 773 796 0.95 14 19 0.00051 0.042 14.7 0.4 3 20 803 820 801 824 0.90 15 19 0.011 0.95 10.5 0.7 1 23 829 852 829 852 0.97 16 19 0.0037 0.3 12.0 0.2 2 23 858 880 858 880 0.92 17 19 4.2e-05 0.0035 18.2 4.7 1 23 884 907 884 907 0.97 18 19 0.00031 0.026 15.4 0.5 2 23 914 935 913 935 0.96 19 19 0.007 0.58 11.2 3.1 1 23 941 963 941 963 0.97
Sequence Information
- Coding Sequence
- ATGAACTTCGACGAGATCGTGGTAAAAGAGATCCCGGGGCTCTGCCGGTGCTGTTTGTCTGAAGGATGTTACAAAGATTTGGGTACAGAGTATACATGGATGAACGATACCGAGGTTTATGCTGATATGTTGCTGGATTGCTTTGATATTGGCATAACTCAACACAATGATGGCCCCAATGGTCCCAAGCGGCTTATCTGTGAAGTGTGCATCACAAGGCTTCGAGATGCATGTAACTTCAAGAAGCAGGTCCTGGACTCGGAGAAGAGGTTTATCGACATGCTGGGAAGAGGAGAATTCAGACCAAAATTGCTCCTCTTCCAGCCACAGGGTCAAGAGTTGAAATCGGAGGCCTTGGAGGAAGCTGTCAGCATGGACCTGAACGAAGCTGAATATTTGGATGACATGGACTATGGAGGTGATGAGGAGGTAATCAAGACTGAAGAGCTCCAACCCACTTCGCTCCCCACGACGTCAGAGGAGCCAAAGCCGAAGAGGGGTCGTCCCCGCAAGGAAGAACACAACTCGGGCTCCCTGGCCAAGGTGGTGAAGAAACCTAAAGTGGCTAAAGGTAAGAAACCTGGGAGATCACACTACGAGGCAGAGAATAAGTCCTCCATATCAGCCACGAAGCGAAACAGGCTCATGAAGAAAAACGCCATAACCATTCTGGAAAGCTCCACAGTTATCCCGTTCAAATGGCACAGACAAAACTATCTCTGTTTCTACTGCCATCTCGCTCTAAAAACAATTGACGCACTAAAACAACACACCAGAAACGAACACATGAAACCTAACATTGTATCAGCGGTTCTATTCATGAGACGCGATGAAAAAGTCAAAATCGACGTCTCATCAACCCAATGTACGCTCTGTGGTGAAGGAGTTAAAGATTTGAATTCCTTGATTGAACATTTGAAAGGAGTTCATGGTAAGGTTTTCAATGAGGGCGGATTTGGAGTGATACCGTACACATTTGAAAGAGACATGTACCAATGTGCTATATGTAATGAAAAGTTTCAGTATTTTATCAAATTGAATCAACATATGAACGAACACTTTGGCAGTTACGTCTGTGAAAAAACGCGCAAATACAAGGGAACCGAATCTTTATCGACGCGTAGACGTCGAAACCTTCAGATTCTGTTCAACAACACATCAATAATACCTTTTAAATGGAGGGGGAAGTACCTTTGCTTCTACTGTAGCAAAGATGTATCGGAATATACAGAGCTAAGGAAACACACAAAATTGCACGGAGATTGTTCTATACTAGACCATTCCTTGAAAGCCTTAAAGGGTGGGACTAATATGGAAATAAAAATAGATGTCTCATATCTTGCTTGCTCGTGTGGAGATAATTTTTCATCTCTGGATGAGGTCATCAAGCATTTGGAAAAGAAGCATAAACTGAATTACGATAAAAATGTGGATATGGCTATAGAAGAGTATAGATTAGTAGATTTAAATTGTCTTATCTGTGATGAAAAATTTACCTATTTTGGCTATTTAGTATCACACGTAAACACAAACCATCCCAAGAATTGTCTTTTATGTGACAAATGCAATCAGAAGTTCAATAAAAAGAGAGACCTGTTTTCCCACATGAAGAATTACCATCGGGAAGGCGGGTATCAGTGTGAACTGTGCCCACAGACATTCACTTCTTTGAATATACTCAGGAAACATAGGATAAACAGGCATATGACGAGATGTCATATCTGTCAATTGAGACTCCCTTCAGCAGCGTTGAGGCAAAAACACATTGAGCTAGAACACCCTGACAATGGGTCCCTACAGTGCGATGTTTGTGATAAAGAGTTTCATACTAAACAAGGTCTCAGAATGCACGCGAGGAAATGTAAAGGAGATCTCCTTGAGCTCTTTAAAAAAGAGGACAACACTATGGATTTGGATTTGAACTACGAAGACCCAGCTAGCAGACCGAGCGTTAAGCAAATACGTGAAAATATAGTCATCGTTATTAATATGTCGACGGCGATACCTTTCAACTTTTACAAAAACAAATTCAATTGTTTTTACTGCTCTAAAGACTTCCCCGATTCGGATTCCATGAAAGAACACACAGTTTTAGAACATCCTGTATGCGATGTGAAAGAAAAATGCATTAGAAAATGCCGAGAATCGGTGGCGTGCGTCAAAATCGATATCTCCACGTTAACTTGTAAGGTTTGCTACGAAAACATGTCCGATTTGGATACCCTACTCGATCATTTGATAGCAAAACACGATGCAAGCTACGACAAATCAATAACAACATGTTTGCAACCCTACAGACTGATTAAGGACAACATGGCGTGTCCAAATTGTCCTGGCGAAGTGTTCCGCTTTTTTGGAACGTTGTTGAAACATATGAATAAGAAGCATACTGATAATAACATAATTTGTGTTTACTGCGGTGAGACGTTTAGACGGGATCAAAATCTCCGCGTCCACATTTGGAGACACCACCGCGATGGGCGGTTTAAGTGTAATATTTGCGGGGCGGAATGTAATATTCCCTCTCGTCTGTACATGCATATGGCCAAAACTCACGGGGTCAAAGCGGCGAAATGTCCGAAATGCCCGGAAGCGTTTGGAACTCAATATCTTCGCCAAAAACATTTGATAGACGTACACAATTCTGGCCACAAATGTTCGTACTGTGGCAAGTTGTTCACGAGGAATTCTTTCATGCGAGACCACATTAGAAGGACTCATCTCAAAGAAAAGAACGTTGAATGCTCTGTATGCAATGTgaagttctttaataacgtgctgttacggagacacatggtgaagcacagtggggagaagaacttccattgcgatgtttgtggcgaaagattcttttggcggaagaGTTTGCGGACTCATATGTCCAGGCATAATAAGCATTTAGAGCTTGTACAGTTGTAA
- Protein Sequence
- MNFDEIVVKEIPGLCRCCLSEGCYKDLGTEYTWMNDTEVYADMLLDCFDIGITQHNDGPNGPKRLICEVCITRLRDACNFKKQVLDSEKRFIDMLGRGEFRPKLLLFQPQGQELKSEALEEAVSMDLNEAEYLDDMDYGGDEEVIKTEELQPTSLPTTSEEPKPKRGRPRKEEHNSGSLAKVVKKPKVAKGKKPGRSHYEAENKSSISATKRNRLMKKNAITILESSTVIPFKWHRQNYLCFYCHLALKTIDALKQHTRNEHMKPNIVSAVLFMRRDEKVKIDVSSTQCTLCGEGVKDLNSLIEHLKGVHGKVFNEGGFGVIPYTFERDMYQCAICNEKFQYFIKLNQHMNEHFGSYVCEKTRKYKGTESLSTRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDVSEYTELRKHTKLHGDCSILDHSLKALKGGTNMEIKIDVSYLACSCGDNFSSLDEVIKHLEKKHKLNYDKNVDMAIEEYRLVDLNCLICDEKFTYFGYLVSHVNTNHPKNCLLCDKCNQKFNKKRDLFSHMKNYHREGGYQCELCPQTFTSLNILRKHRINRHMTRCHICQLRLPSAALRQKHIELEHPDNGSLQCDVCDKEFHTKQGLRMHARKCKGDLLELFKKEDNTMDLDLNYEDPASRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMKEHTVLEHPVCDVKEKCIRKCRESVACVKIDISTLTCKVCYENMSDLDTLLDHLIAKHDASYDKSITTCLQPYRLIKDNMACPNCPGEVFRFFGTLLKHMNKKHTDNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKTHGVKAAKCPKCPEAFGTQYLRQKHLIDVHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSVCNVKFFNNVLLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMSRHNKHLELVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00666738;
- 90% Identity
- -
- 80% Identity
- -