Edef005138.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- -
- Assembly
- GCA_905404285.1
- Location
- FR990094.1:6013333-6015923[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00032 0.028 15.5 1.9 1 23 5 28 5 28 0.94 2 17 0.0042 0.37 12.0 4.9 1 23 99 121 99 121 0.98 3 17 0.0074 0.65 11.2 0.2 1 23 125 147 125 147 0.94 4 17 0.005 0.44 11.7 0.2 1 23 152 177 152 177 0.94 5 17 0.0043 0.38 11.9 2.6 1 23 183 206 183 206 0.97 6 17 9.3e-05 0.0082 17.2 0.1 1 23 213 236 213 236 0.98 7 17 0.0015 0.13 13.4 0.5 1 23 242 264 242 264 0.97 8 17 5.8e-06 0.00051 21.0 2.8 1 21 271 291 271 292 0.97 9 17 1.4 1.2e+02 4.1 0.2 1 23 410 432 410 432 0.93 10 17 0.55 48 5.3 0.1 3 23 458 479 456 479 0.94 11 17 0.08 7 7.9 0.1 1 23 505 527 505 527 0.95 12 17 0.00026 0.023 15.8 0.2 1 23 531 553 531 553 0.98 13 17 0.00049 0.043 14.9 0.8 1 23 558 581 558 581 0.93 14 17 0.0026 0.23 12.6 0.3 2 23 588 610 588 610 0.93 15 17 0.089 7.9 7.8 6.9 1 23 617 640 617 640 0.96 16 17 0.00014 0.012 16.7 2.4 2 23 647 668 646 668 0.96 17 17 0.00011 0.01 16.9 1.7 1 23 674 696 674 696 0.98
Sequence Information
- Coding Sequence
- ATGAAGAACCTGTATATCTGTTTCTATTGTGATGCACAGTTTAAAGACCCGGCTGAGCTAAGGAAGCATTATCATTATACCCACACCACTATCACTCCCGCGCTACTGACCAATGGCACGAGGCTTAAAAAGTATGAACTAATCAAAGTAGATATAACCGACGTCGGCTGCAAACTCTGCGAAGACACCATACAAGACTTCAACGATCTCAAGCTACACTTGCTCAAGAAACATGACAAAGATATCAATCCAACATCCGATGGAGTCTTACCATTTAGGGTAACTAAAGACTGCTTTAAATGCGCGTTATGTGACAAGACATGCGATGAGTTCAAATCGCTAAATCATCACATGAATTTGCATTATCAGAACTTTATTTGCGAGCAATGTGGTTCAGGATTCGTCACTCCAGATAGGTTGAGGGTCCACTCGTTTTCACACGAGACTGGAGCTTTCAGATGCGAAGCGGAGGGATGTGAGAAGATCTTCCGCTCAAAAAACAACAAAAACGAACATTACGCTATAGTCCACATGAAAAGAAAGCGACACAGATGCCCTCAATGCTCTGAGACCTTTATCAACTACTTCCAGAGATCCAAACATATATCTACAATACATGGAATAAAGTTAAAAGAGTTCAAATGCGACTTATGTGCTAAAGTCTTTACTCTAAGCGGCAAACTCGGGGCTCATATTCGGACGGCTCATATGAAGATGAAGAGGTTTACCTGCGAGGTTTGTTCGTGGAAAGTCTACTCGAGGACAGAGTTGAAGCTGCACATGGTAAAACACGTCGCGGTTAACAGGAGGTTCCAGTGTCATGTTTGTAAGAAGAGCTACGCGAGAGAGTACAGTTTGAAGCATCACATGAGGGGAGCGAACACAAACCCTGCCTCCAGCCGACCAGTCAGGCGAATAGTGCCGCTATTCCAAGTAGCATACGATAGCAGCCTGTGCAAACCCCTGGGAACCATCAGCGACTTCAGGAAACTTAAAAAGAAAGGCTTCTCCACAACACCCAACACTGTTACGATGGTCGTATCTAGAAGCGCGTCGCCCAACTCGCCTGCTCGATCTCCGTCGCCTTTTCAACTCGAAGATACCAATCCTCCTGCCAAATTTCTACTTAAACCAGAGCCGAAAAAGAAAATTTCTGACACAAGACAAAATGCCCTAACTATCTTCGAATTCTCTAACGCATACCCTTTCATATTCTCAAACAATAAGTTCAAATGTTTCGTCTGTTCGCAACCCTACCTCGAACTGGTCCCCTTGAAGCAACACATGCAAGAACACGCCTTCGCATCTTTGAAACGGCTGGTGAATAATAGGAAAGAAAACGTTTTAAAAGTCGATGTCAGCGACATGGCTTGCAAGCTATGCTCGCTGCCCATCCGAGATTTGGTCACGCTAAAACTCCATCTAAAAGAATCTCACGGAAAACCAGTCGACACGGAACTGCAAGACAATCTGATTCCATTCAACTTGAATTTGTTTAACGCCAATGAAGGGTACCAGTGCGTCATCTGCGAGCAACGCTTCATCAAACTCCGCATACTGGTGATCCATATGAGCGCTCACTTCAGCAACTACAGCTGTGAAATTTGCGGATCAGGCTTCATGACTTTGCGGCTGTTAAAAAAGCATTTAGAAGTTCATGAGACGGGTAACTTTCTATGTGACCGATGCGATAAATCGTTCACGACCAGCTATAAACGCGCTTTGCATATCCGAGGGGTACATTTGAAGCTTTATCCTCGCAGATGTCCCATTTGTCCTGAACGTTTCAACTCGAATTACAAAAGAACCATCCACTTACAAGACGTTCACAATCATTCGACTCGGGTGCACAAATGCAAGACTTGTGATCGTGGCTTCAATCTGAAGTACCACCTGATCTGTCACGTGAGGTCGGTGCACTTGCAGGAGAGGAATCAGCAGTGCGACGTCTGCCTACAAAGGTTCTGCAACAAGGAGTCTCTGAAGAGACACATGGTCATTCATACCGGGGAAAAGAACCACAAGTGTGACGTCTGCGGGATGGCTTTTTTGAGGAGGAAAAATCTTAAAGATCATTTAAGGCTGCATGATATTAATTAG
- Protein Sequence
- MKNLYICFYCDAQFKDPAELRKHYHYTHTTITPALLTNGTRLKKYELIKVDITDVGCKLCEDTIQDFNDLKLHLLKKHDKDINPTSDGVLPFRVTKDCFKCALCDKTCDEFKSLNHHMNLHYQNFICEQCGSGFVTPDRLRVHSFSHETGAFRCEAEGCEKIFRSKNNKNEHYAIVHMKRKRHRCPQCSETFINYFQRSKHISTIHGIKLKEFKCDLCAKVFTLSGKLGAHIRTAHMKMKRFTCEVCSWKVYSRTELKLHMVKHVAVNRRFQCHVCKKSYAREYSLKHHMRGANTNPASSRPVRRIVPLFQVAYDSSLCKPLGTISDFRKLKKKGFSTTPNTVTMVVSRSASPNSPARSPSPFQLEDTNPPAKFLLKPEPKKKISDTRQNALTIFEFSNAYPFIFSNNKFKCFVCSQPYLELVPLKQHMQEHAFASLKRLVNNRKENVLKVDVSDMACKLCSLPIRDLVTLKLHLKESHGKPVDTELQDNLIPFNLNLFNANEGYQCVICEQRFIKLRILVIHMSAHFSNYSCEICGSGFMTLRLLKKHLEVHETGNFLCDRCDKSFTTSYKRALHIRGVHLKLYPRRCPICPERFNSNYKRTIHLQDVHNHSTRVHKCKTCDRGFNLKYHLICHVRSVHLQERNQQCDVCLQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00044706; iTF_00826050; iTF_01208536;
- 90% Identity
- -
- 80% Identity
- -