Arep020666.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421244.1:3999627-4002500[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0021 0.17 13.0 0.7 1 23 59 81 59 81 0.97 2 18 0.0081 0.64 11.2 5.0 1 23 152 174 152 174 0.99 3 18 0.0059 0.47 11.7 0.1 1 23 178 200 178 200 0.95 4 18 0.0018 0.14 13.3 0.9 1 23 205 230 205 230 0.95 5 18 0.0015 0.12 13.5 1.8 1 23 236 259 236 259 0.97 6 18 4.1e-05 0.0033 18.5 0.1 1 23 266 289 266 289 0.98 7 18 0.00039 0.031 15.4 0.7 1 23 295 317 295 317 0.98 8 18 1.6e-06 0.00013 22.9 3.3 1 23 324 346 324 346 0.98 9 18 1e-05 0.00083 20.3 0.3 1 23 352 375 352 375 0.97 10 18 0.012 0.99 10.6 0.5 1 23 493 515 493 515 0.98 11 18 2.1 1.7e+02 3.6 0.1 3 23 541 562 540 562 0.94 12 18 0.19 15 6.9 0.1 1 23 588 610 588 610 0.95 13 18 0.00033 0.026 15.6 0.2 1 23 614 636 614 636 0.98 14 18 0.00014 0.011 16.8 0.6 1 23 641 664 641 664 0.96 15 18 0.0033 0.27 12.4 0.3 2 23 671 693 671 693 0.93 16 18 0.044 3.5 8.9 6.5 1 23 700 723 700 723 0.96 17 18 5.8e-05 0.0046 18.0 4.7 2 23 730 751 729 751 0.96 18 18 0.00014 0.011 16.8 1.6 1 23 757 779 757 779 0.98
Sequence Information
- Coding Sequence
- ATGCACATTCTCTCGTTTATAGGTATTCATGAAAACCAAGCGAGAATAGATGACAGAGAAACAAAACCTACTGCAACCAAGAGACAGACCGAAGATATCGCGGCGAGAAAGAAACGAGCCTACACACTTCTAGAATGCTCTAGAATATGCCCCTTCACGTGGATGAAGAACTTGTATTTCTGTTTCTACTGTGACGCACAGTTCACAGATCCCGCCGACATGAGGACACATAACTCTACTCACTACTCCGTCACGCCGTCGCTGTTAAGAAATGGCATGAGGCTCAAAAAGCACGAGCTGATTAAGGTAGACATAACAGACGTCGGCTGCAGACTCTGCGATGACACCATCCACGACTTTGACGACCTCAAGCTGCATCTACGCAAAAAACATGACAAAGACATCGATCCAAAGTCAGATGGCGTCTTACCCTTCAGGATAACAAAGGCCAGCTTCAAATGCGCGCTATGCGAGAAAACATGCGACGAATTCAAATCGCTGAACCATCACATGAATATGCATTATCAGAACTTTATTTGCGAGCAGTGTGGCTCTGGATTCGTGACCCCAGATAGGTTGAGAGTCCACGCGTTTTCGCACGAAACTGGAGCGTTTAAATGCGATGCAGAAGGCTGCAACAAGGTCTTCCGATCAAGAAACAACAAGAACGAACACCACGCAATAGTTCACATGAAACGAAAACGGCACAGATGCCCTCAATGCCCGGAGACGTTCATCAACTACTTCCAAAGGTCCAAGCATATATCGACAGTTCATGGAGTAAAGTTAAAAGAGTTCAAATGCGATTTGTGTCCGAAAGTGTTTACGTTAAGCGGGAAGCTCGGGGCGCATGTTCGGACGGCTCATATGAAGATGAAGAGGTTTACTTGCGAGGTGTGCTCGTGGAAGGTGTACTCGAGGACGGAATTGAAGCAGCACATGATAAAACATGTCGCAGTCAACAGGAGGTTCCAGTGCCATGTGTGTAAAAAGAGTTACGCGAGGGAATACAGTTTGAAGCAGCATATGAGGGCACATGAGAACGGCAGGCGTTTTGTTTGTGGAGCCTGCGGGAAGGTTTTTGTACAAGCATTCAGTCTCAGCAGACATACGAGGACGTATCATCCCGgaGCGAACACAAGCCCCGCCGGCCGGCCAGGCAGACGAATAGTGCCGCTATTCCAAGTAGCATATGATCGCAGCCTGTGCAAACCTCTGGGAACCATCAGCGACTTCAGTAAACTTAGGAACAAAAGCATCTCCGCTGCACTTGACGCCGTCACTTTCGTATCGAGGAGCGCGTCGCCCGCCTCGCCTGCTCGATCTCCCTCGCCTTTCCAACTCGAAGAAACTAACCCACCCGCCAAATTTCTACTTAAACCCGAACCGAAAAAGAAAACGTCAGACACGAGGCAAAACGCCTTGACAATCTTCGAATTCTCCACCGCGTACCCTTTCATTTTCTCAAACAACAAGTTTAAATGTTTCGTCTGCTCGAAACCCTATCTCGATCTGGTTCTCTTGAAGCAGCACATGCAAGAACACGCCTTCGCATCCTTGAAACGACTGGTCAATAATAGGAAGGAGAACGTCCTGAAAGTCGACGTCAGCGACGTGGCGTGCAAATTGTGCTCAATACCAATAAAAGATTTGGTCTTCTTAAAACTGCATCTAAAAGAAGCCCACGCTAAACCAGTCGACCCGGAACTCCAAGATAATCTGATACCATTCAACTTAAACTTGTTTACTGTCAACGAGGGGTATCAGTGCGTCATTTGCGAACAGAACTTCATAAAACTCCGCATACTGGTGATCCACATGAGTGCACACTTCAGCAACTACAGCTGTGAAATCTGCGGATCAGGGTTCATGACACTACGACTGCTAAAGAAACACTTGGAGGTCCACGAGACTGGCAACTTCCCTTGCGATCGATGCGACAAATCTTTCACGACCAGCTACAAACGAGCCTTGCATATCCGAGGGGTGCATCTAAAGCTTTACCCTCGCCGATGCCCAATATGTCCGGAAAGATTCAACTCGAACTACAAAAGAACTATTCACTTGCAAGACGTGCATAACCACTCAACTCGAGTGCACAAATGCAAGACCTGTGGGAGAGGTTTTAATCTGAAATATCACTTGATCTGCCACGTGAGATCGGTGCACTTGCAAGAAAGGAATCAGCAATGTGACGTCTGTCACCAGAGGTTCTGTAACAAGGAGTCTTTGAAGAGACATATGGTCATCCACACTGGAGAGAAGAACCATAAGTGTGAAGTGTGCGGAATGGCGTTCCTGAGGAGGAAGAATCTCAAAGATCATTTGAGGCTACATGATATCAATTAA
- Protein Sequence
- MHILSFIGIHENQARIDDRETKPTATKRQTEDIAARKKRAYTLLECSRICPFTWMKNLYFCFYCDAQFTDPADMRTHNSTHYSVTPSLLRNGMRLKKHELIKVDITDVGCRLCDDTIHDFDDLKLHLRKKHDKDIDPKSDGVLPFRITKASFKCALCEKTCDEFKSLNHHMNMHYQNFICEQCGSGFVTPDRLRVHAFSHETGAFKCDAEGCNKVFRSRNNKNEHHAIVHMKRKRHRCPQCPETFINYFQRSKHISTVHGVKLKEFKCDLCPKVFTLSGKLGAHVRTAHMKMKRFTCEVCSWKVYSRTELKQHMIKHVAVNRRFQCHVCKKSYAREYSLKQHMRAHENGRRFVCGACGKVFVQAFSLSRHTRTYHPGANTSPAGRPGRRIVPLFQVAYDRSLCKPLGTISDFSKLRNKSISAALDAVTFVSRSASPASPARSPSPFQLEETNPPAKFLLKPEPKKKTSDTRQNALTIFEFSTAYPFIFSNNKFKCFVCSKPYLDLVLLKQHMQEHAFASLKRLVNNRKENVLKVDVSDVACKLCSIPIKDLVFLKLHLKEAHAKPVDPELQDNLIPFNLNLFTVNEGYQCVICEQNFIKLRILVIHMSAHFSNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDRCDKSFTTSYKRALHIRGVHLKLYPRRCPICPERFNSNYKRTIHLQDVHNHSTRVHKCKTCGRGFNLKYHLICHVRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCEVCGMAFLRRKNLKDHLRLHDIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00666720;
- 90% Identity
- -
- 80% Identity
- -