Pdol052878.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- -
- Assembly
- GCA_963854805.1
- Location
- OY978467.1:7382111-7384632[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.6 9.2e+02 2.4 1.0 10 23 3 16 1 16 0.82 2 15 0.00093 0.15 14.3 0.2 1 23 20 42 20 42 0.94 3 15 0.00071 0.12 14.6 0.4 1 23 47 72 47 72 0.95 4 15 0.004 0.66 12.3 1.1 1 23 78 101 78 101 0.93 5 15 1.8e-05 0.0029 19.7 0.1 1 23 108 131 108 131 0.98 6 15 0.00036 0.059 15.6 0.4 1 23 137 159 137 159 0.97 7 15 2.4e-06 0.00039 22.4 1.5 1 23 165 187 165 187 0.99 8 15 2.3 3.8e+02 3.6 0.5 1 23 309 331 309 331 0.91 9 15 0.42 69 5.9 0.0 1 23 402 424 402 424 0.91 10 15 0.00025 0.042 16.0 0.2 1 23 428 450 428 450 0.98 11 15 0.00017 0.027 16.6 0.4 1 23 455 478 455 478 0.96 12 15 0.0026 0.43 12.9 0.3 2 23 485 507 485 507 0.93 13 15 0.075 12 8.3 6.6 1 23 514 537 514 537 0.95 14 15 0.00013 0.022 16.9 2.4 2 23 544 565 543 565 0.96 15 15 0.00011 0.018 17.2 1.6 1 23 571 593 571 593 0.98
Sequence Information
- Coding Sequence
- ATGAAATTTGATGAATTCAAAACGCTCAATCATCATATGAATATACACTTCCAGAATTTCATTTGTGAACAATGCGGCACAGGATTTGTAACACCGGATCGGTTGAGAGTCCATTCGTTCTCTCACGGAACAGGGGCTTTCAAATGCAACGCTGAAGGCTGCGATAAGATCTTCCGTTCGAAAAACAACAAAAACGAACATTACGCTATAGTCCACATGAAAAGGAAAAGACACAGATGTCCACAATGTCCTGAAACCTTTATCAATTACTTTCAGAGGTCCAAACATATATCTGCTGTGCACGGCCTCAAGTTGAAAGAATTCAAATGTGAGATGTGTCCGAAAATTTTTACATTGAGTGGAAAATTGGGTGCTCACATCCGCACAGCTCATCTGATGATGAAGCGGTATGCTTGCGATGTCTGCTCGTGGAAGGTGTACTCCAAGACGGAGTTAAAACAGCACATGATCAAACACGTTGGTATCAGGAAGTTCCAGTGTAACGTGTGCAAGAAAACTTATGCTAGAGATTATACGTTGAAGGAACACATGAGAATACATAATGACGAGCgaTCCGACACAATTCCTGACTCCGCGCTGCGAAAGACAAGAGTTGTGCCGCTATTCCAAGTTGCATATGATCGCAGCTTATGCAAACCACTTGGTACCATCTCTGACTTCAGTAAACTGAAAAAGGAAAGATTGCCTGCACTTAATACTGCCCCTTTCGACGTTTCACGGAGCCCCACCCCTGTATCAATACCTAGGTCTCCGTCCCCATTACTTGAAGAAATAAGTATCAATCCACCAGCTCAGTTCCTTTTGAAACCAAAGCCGGAGAAAAAATGCTCAGACACGAGACTAAACGCCTTGACCATCTTTGAATATTCAACCGCTTACCCATTCGTCTTTTCGAATAACAAATTCAAATGCTTTGTTTGCTCTCAACCTTACCTTGATCTCAACATATTAAAACAGCATATGAATGAGCACGCTTTTACTCCTTTGAAACGACTAGTGAACAATAGAAAAGAAAACGTTCTTAAAGTTGACGTCAGTGATTTAACTTGCAAACTGTGCTTGCTGCCCATCAAGGATCTGACTACGATAAAACTACACTTGAAAGAATCTCACGGGAAACAAGTTGATGCAGAACTCCAGGATAATCTAATACCGTTCAACTTGAATCTAGCGACCGAAGGATACCAATGCGTTATATGTGAAgaaaacttcatcaaaattcGTATATTAGTAATCCATATGAGTGCCCACTTTAGCAACTACAGCTGCGAAATCTGCGGATCAGGATTTATGACTTTACGATTGCTGAAAAAACATTTAGAAGTTCACGAAACAGGCAACTTTCCTTGTGACCAGTGCGAGAAATCTTTCAGCACTAGTTATAAGCGCGCGCTGCATATTCGAGGCGTTCATTTAAAACTGTATCCTCGTCGGTGTCCAATTTGCCCTGAACGATTTAACTCAAACTACAAGAGAACTATTCATCTTCAAGACGTACATAACCAGTCAACTAGAGTGCACAAGTGCAAGACTTGTGGTAGAGGATTCAATCTGAAGTATCATTTGATTTGCCACGTCAAATCTGTACATTTGCAGGAGAGAAATCAACAGTGTGATGTATGCCTCCAAAGGTTTTGTAACAAGGAATCTCTGAAACGGCACATGGTCATTCATACAGGAGAAAAGAACCACAAGTGTGAAGTGTGTGGAATGGCGTTTTTGAGGCGGAAGAATCTTAAGGATCATTTAAGACTGCATGATATTAATTGA
- Protein Sequence
- MKFDEFKTLNHHMNIHFQNFICEQCGTGFVTPDRLRVHSFSHGTGAFKCNAEGCDKIFRSKNNKNEHYAIVHMKRKRHRCPQCPETFINYFQRSKHISAVHGLKLKEFKCEMCPKIFTLSGKLGAHIRTAHLMMKRYACDVCSWKVYSKTELKQHMIKHVGIRKFQCNVCKKTYARDYTLKEHMRIHNDERSDTIPDSALRKTRVVPLFQVAYDRSLCKPLGTISDFSKLKKERLPALNTAPFDVSRSPTPVSIPRSPSPLLEEISINPPAQFLLKPKPEKKCSDTRLNALTIFEYSTAYPFVFSNNKFKCFVCSQPYLDLNILKQHMNEHAFTPLKRLVNNRKENVLKVDVSDLTCKLCLLPIKDLTTIKLHLKESHGKQVDAELQDNLIPFNLNLATEGYQCVICEENFIKIRILVIHMSAHFSNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDQCEKSFSTSYKRALHIRGVHLKLYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCKTCGRGFNLKYHLICHVKSVHLQERNQQCDVCLQRFCNKESLKRHMVIHTGEKNHKCEVCGMAFLRRKNLKDHLRLHDIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00666720;
- 90% Identity
- -
- 80% Identity
- -