Edef008493.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- -
- Assembly
- GCA_905404285.1
- Location
- FR990093.1:8312575-8314923[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.2e-06 0.00028 21.8 4.0 1 23 8 31 8 31 0.95 2 20 0.00022 0.02 16.0 0.1 2 23 37 59 36 59 0.95 3 20 1e-05 0.00091 20.2 0.3 2 23 68 90 68 90 0.97 4 20 1.2e-05 0.001 20.0 1.7 2 23 99 121 98 121 0.95 5 20 3.4e-05 0.003 18.5 4.0 2 23 129 151 129 151 0.95 6 20 1.1e-06 9.4e-05 23.3 0.9 2 23 159 181 158 181 0.96 7 20 1.6e-06 0.00014 22.7 5.0 1 23 187 210 187 210 0.98 8 20 0.0079 0.69 11.1 1.2 2 23 246 268 245 268 0.94 9 20 0.012 1 10.6 1.9 1 23 298 321 298 321 0.98 10 20 0.037 3.3 9.0 1.9 2 21 329 348 328 349 0.93 11 20 0.019 1.6 9.9 0.9 2 23 358 380 358 380 0.94 12 20 0.0033 0.29 12.3 6.6 1 23 404 427 404 427 0.97 13 20 0.00013 0.012 16.7 0.6 2 23 434 456 433 456 0.96 14 20 0.00011 0.0098 16.9 1.9 2 23 463 485 462 485 0.94 15 20 0.0068 0.6 11.3 2.2 1 23 491 514 491 514 0.97 16 20 0.14 13 7.1 5.0 2 23 522 544 522 544 0.95 17 20 0.00035 0.03 15.4 0.1 1 23 551 574 551 574 0.97 18 20 0.0047 0.41 11.8 0.5 1 23 581 604 581 604 0.92 19 20 0.00013 0.012 16.7 2.3 2 23 620 642 620 642 0.97 20 20 3.2 2.8e+02 2.9 0.7 1 11 692 702 692 704 0.93
Sequence Information
- Coding Sequence
- ATGTCTCAGTCTCAAGGCTCCTTCGTTTGCGACTACTGTAGTCGCTCGTTCACTAGGAAATACAATCTACAGACACACATAGAAAACTGTCATGTCACCTCGTCGAGCTACTGCGAAATTTGCGACCAAAAATTTGGTAGCCCCAGTGGCCTACAACTACATCTCTCCAGAGGCCACAACAGATATGGCCAACCGTTCCCCGAATGCGATGTATGCGGTCGCATTTTTACGAGAAAACAAAATATAACGTCTCACATGATAACCGTTCATTTACAAGGGATAGGGCCGGAGATTCGATGCCGGACTTGCGGAAAGACCTTTACTACAGACAGAAACCTGAAGCGACACGTGAAGTTGTTACACAATCCTGACGTAGAATATCCCACCTGTGATCATTGCCACAAGGTGTTTAAAAGCAAACATTCGCTCGTTGCCCATATCCAGGCAGCTCACAATCACACTGACAAAACTATCAAATGCTACATGTGTGATAAAGTCTACACTAACAACAGGAATCTTAAACGGCACATTGAGACGTTACATGGGGAGAAAGAAGACCACAAATGCCATATCTGTCCCAAAGTCTACACATCTAATCAAAGTCTTAGGAGACATATAAAAACAACCCACAATTCTGACGAGGACAGTGTCCAATGCGAGCCAATATTACTTGATTCTGAGAATTTAGATTGGCAAAGCAATGATTCCAATGAATCTTACTACAGTGATACAGTCACATGCGAAGCTTGCCATAAATCATTTGCGGAAGAGGCTCTTCTACGTCAGCATGTTAAACATGAACATCCTTTCGATGTTTTTTACGATTACTGCAAACAGTATTTGGAAAAGATAGCTAGCAGAGGTCAGCTGTTGATAAATAAGCAGAATTTCTTCAAATGTGAATTCTGCTTCTCAGCTTACTTCAACGTCTACGAACTAAAAGAGCACATGAAAACGAATCATGACATCGAATACAATTCCTGTACTTGCAACGTGTGCTTCTCCAAGTTTTACAGTAAAGAGAACTTGGCTGAACATAAGAGGATTTGCTTGCCACCGCCCGACGTCAACTCGTGCAACTATTGCGATAAACTCTTCACCGATATCACGAGTTTAGAGTTCCATACCAGGATATTCCATCCCCAAGCGCAACTGGCCGATCCAAACATAACTTCCACCAAATCTGATGACGCTTCAGATGGCAGCTCGTTTAAATGCGAACATTGCAATCGGATTTACTACAGCGATAGATCGTTGAAGCATCACATGAAATTGAAACACACGACAGACGAGGCAGTTGAATGCGGATACTGTAACAAAGTTTGCAACAACAAATACTATCTCGCGTCCCATGTTAAAATCGTGCATAGCGTTGTAGATTTATCCAAATGCGACTATTGTGACAAGCTCTTCAAGTCCAAGCGTAATATTCGACGACATATTGAGTATACGCACATGGGAATGCAGAGATACAAGTGCATCGAATGTGAAACTCTGTTCAAAGAAAAGCGTAGTCTTCGTAAACACGTTCGAACCAAGCATCCTAACTCCACATCGTTCCCACAGTGCCATGTCTGCCAGAAGAGATTCGAGTCCGCAAAATCCTGCAAAATACATTTGAAGCTTCTCCATTCATTCAATATGAACACATACCCTTGCGATTTGTGTTCAGTGTCATTTGGCTCGAAGGAGGCCTTGAAAATTCACTTGGAAACGAAACATTTGGCAAAGGACGAAATTTACAAATGCGAGGAGTGTAACTTAGTTTTTAAGGGGTCTCAAAAATTCGAAGAGCATAATGAAGTAAGTCATGCTTACGTAAATACGGTCACTAAACAGAAGGCTTTGCCGCTACCACGCTGCGTAATTTGCGTGAAAGACTTCAGCACGCGGAAAACTTTGAGACGCCACATAAAGAAATTCCACGAAGAGTTTCACGCGGAAGATCTCGCAAACTTTGGTTGTCGAAACCGTGAATTCGACGTCAGCTGCGAAGACTGTTTGAAGAATATAAACGATGAATACTACGTCGATGTGTATAACAGGGTCAAGCATATTAAAGATTCGGTCATTTTCAAATGCGAGACGTGTCACTCGTCTTTTAAAGCTCTAGAATTTGCGATACTGAGACATAAAGTGGGTAATGGAGACAATTCGAAAATAATCATAAGTGATCTGTGTACGACCCAAATGAGCGATGACGAAGCGTTTTATTCAGAACTGGAGCCATTACTTGAGTACATGGAAGCTGAGAGTACGACTGCAGATATCAACTCCGATCCGGAAAAAATAGATTCTAAAATCAAGGTTGAACCAAAAGAAGTGAAGATGGAGCCGGTCTCTCCTTAA
- Protein Sequence
- MSQSQGSFVCDYCSRSFTRKYNLQTHIENCHVTSSSYCEICDQKFGSPSGLQLHLSRGHNRYGQPFPECDVCGRIFTRKQNITSHMITVHLQGIGPEIRCRTCGKTFTTDRNLKRHVKLLHNPDVEYPTCDHCHKVFKSKHSLVAHIQAAHNHTDKTIKCYMCDKVYTNNRNLKRHIETLHGEKEDHKCHICPKVYTSNQSLRRHIKTTHNSDEDSVQCEPILLDSENLDWQSNDSNESYYSDTVTCEACHKSFAEEALLRQHVKHEHPFDVFYDYCKQYLEKIASRGQLLINKQNFFKCEFCFSAYFNVYELKEHMKTNHDIEYNSCTCNVCFSKFYSKENLAEHKRICLPPPDVNSCNYCDKLFTDITSLEFHTRIFHPQAQLADPNITSTKSDDASDGSSFKCEHCNRIYYSDRSLKHHMKLKHTTDEAVECGYCNKVCNNKYYLASHVKIVHSVVDLSKCDYCDKLFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTSFPQCHVCQKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSKEALKIHLETKHLAKDEIYKCEECNLVFKGSQKFEEHNEVSHAYVNTVTKQKALPLPRCVICVKDFSTRKTLRRHIKKFHEEFHAEDLANFGCRNREFDVSCEDCLKNINDEYYVDVYNRVKHIKDSVIFKCETCHSSFKALEFAILRHKVGNGDNSKIIISDLCTTQMSDDEAFYSELEPLLEYMEAESTTADINSDPEKIDSKIKVEPKEVKMEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00206306; iTF_00207178; iTF_00896130;
- 90% Identity
- -
- 80% Identity
- -