Bbet019845.1
Basic Information
- Insect
- Biston betularia
- Gene Symbol
- -
- Assembly
- GCA_905404145.1
- Location
- FR989892.1:800562-802919[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.8e-06 0.00047 21.1 4.0 1 23 5 28 5 28 0.95 2 19 0.0019 0.15 13.1 0.1 3 23 35 56 33 56 0.95 3 19 1.4e-06 0.00011 23.0 0.3 2 23 65 87 65 87 0.97 4 19 7.5e-06 0.0006 20.7 1.9 2 23 96 118 95 118 0.95 5 19 5.7e-05 0.0046 17.9 3.5 2 23 126 148 126 148 0.94 6 19 7.3e-07 5.8e-05 23.9 0.4 2 23 156 178 155 178 0.95 7 19 1e-06 8.1e-05 23.5 5.9 1 23 184 207 184 207 0.98 8 19 0.00016 0.013 16.5 0.9 2 23 243 265 243 265 0.95 9 19 0.009 0.72 11.0 0.9 1 23 295 318 295 318 0.98 10 19 0.27 21 6.4 2.3 2 20 326 344 325 346 0.92 11 19 0.047 3.8 8.8 0.9 3 23 356 377 355 377 0.95 12 19 0.02 1.6 10.0 5.9 1 23 401 424 401 424 0.97 13 19 0.0038 0.3 12.2 1.1 2 23 431 453 430 453 0.93 14 19 1.3e-05 0.001 20.0 2.0 2 23 460 482 459 482 0.94 15 19 0.0074 0.59 11.3 2.2 1 23 488 511 488 511 0.97 16 19 0.19 15 6.9 7.1 2 23 519 541 519 541 0.95 17 19 0.00037 0.03 15.4 0.1 1 23 548 571 548 571 0.97 18 19 0.0049 0.39 11.9 0.1 1 23 578 601 578 601 0.92 19 19 0.0013 0.1 13.7 2.9 2 23 617 639 617 639 0.96
Sequence Information
- Coding Sequence
- ATGGCTCGTGCCTTCATTTGCGACTATTGTAGTCGCTCTTTTACAAGAAAATACAATTTACAGACACATATTGAAAATTGCCATATCACTGCATCGAGCAACTGTGAACTGTGTGACCAACAATTTGGGAGTCCCAGTGGCTTACAATTACACCTCTCTAGAGGTCACAACAGGCATGGCCAACCATTTCCTGAATGTGATATTTGCGGTCGAGTTTTCACGAGAAAACAGAATGTAACGTCTCATATGATTACTGTCCATTTACAAGGCATAGGGCCCGAGATTCGGTGTCGAACTTGCGATAAAACCTTTACTACAGAAAGAAATTTGAAGAGACACGTCAAATTATTACACAATCCAGACTTAAAATATCCTACCTGTGATGAATGTCACAAGGTTTTTAAAAGTAAACATTCGCTAGTCACTCATATACAAGCAACTCATAATCATATAGACAGAACTATCAAATGCCCTATGTGCGATAAAGTGTACACTAATAATAGGAATCTTAAACGACACGTTGAGATGTTGCATGGGGAGAAAGAAGATCACAAATGTCACATTTGTCCCAAAACCTACACTTCTAATCAAAGCCTTAAGCGACATATCAGGACTACCCACAACTCCGATGAAGACAGTCTCCAGTGCGAAGTAAAATTGTTAGATTCTGAGAATTTAGAATGGCAAAGCAATGATTCTAATGAATCTTATAACACTGACATAGCCACATGCGAGGTTTGCAACAAATCATTTGCGGGAGAGTCTCTTTTGCGGCATCATGTTAAAAATGAACATCCTTTCGATGTTTTCTACGATTACTGCAAACGATACATGGAGACAATGGCTAGCAGAAAACAACTGACAATCAATACGCAGAATCTCTTCAAATGTGAATTCTGCCTCTCGGCTTTCTTCAATGTTTATGAACTTAAAGAGCACATGAAAGTGAATCATGATATCGAATACAATTCGTGCACTTGTAATGTGTGCTTCTCGAAGTTTTTCAGTAAAGAAAACTTGATGGAACATAAGACGATCTGCTTGCCACCGCGCGACGTCAACTTTTGCAATTATTGTGATAAACTCTTCACTGAGATCTCGAGTTTAGAGTTCCATACTAGAATTTTCCATCCCCAAGCACAACTAGCCGATCCAAACATAAGTTCTACCAAATCTGACGACGCCTCAGATCACAGCTCGTTTAAATGCGTCCATTGCAATCGGATATACTACAGCGATAGGTCATTGAAGCATCATATAAAATTAAAACACACGACAGACGAGTTAGTCAAATGTATTTACTGTAACAAAATCTGCAACAACAAATATTATCTCGCATCTCATATCAAAATCGTGCACAGTGTCGTAGATTTATCGAAATGCGACTACTGTGATAAAATGTTCAAATCCAAACGTAATATTCGAAGGCATATTGAGTACACGCACATGGGGATGCAAAGATACAAGTGTATAGAATGCGAAACTCTTTTCAAAGAAAAGCGCAGTCTTCGCAAACACGTGCGGACTAAGCATCCTAACTCTACATCGTTCCCTCAATGCCATATTTGCCATAAGAGATTTGAGTCTGCAAAATCTTGCAAAATACATTTGAAACTTCTCCATTCATTCAATATGAACACATATCCTTGTGATTTGTGTTCGGTGTCGTTTGGCTCGAAAGAGGCTTTGAAAATCCATTTGGAGACGAAACATTTGGCTGAGGATGAAATCTACAAATGTGAAGAGTGTAATGTAGTGTTTAAAGGATCTCTAAACTTCGAGGAGCACAATGAAGTTGCTCACTCTTACTTAAATGTCGTCACGAAACAAAAGACTTTGCCGTTACCGCGCTGCGTGATATGTATGAAAGACTTTAGCACGCGGAAAACTTTGAAACGCCACATAAAGAAGTTTCACGAGGAATTCCACGCGGAAGATCTTGCGAACTTTGGTTGCCAAAACCGTGAATTAAACATCAATTGTGAAGACTGTTTCAAGAACATTAACAATGAATACTACATCAACGTGTATAACAACGTCAAGCATGATAAAGACGCTGTAATCTTTGAATGCGAGACGTGTAATTCTTCTTGTAATGCTTTAGAATTTTCGATACAAAGGCATAGATTTGTAGGTGATCGGCATAAGGCGAAAGTGATCATGAGTGATTTGTGTACGACTCAAATGAGCGATGACGAAGTGTTACATTCCGAACTGGGCCCTCTACTTGAGTACATGGAAGCGGAGAGTACTACTGCTGATATCAATTCTGATCCCGAAGTGGTAGAGTCCATTATCAAAGTGGAATTAGAGGAAATTTGTTCTGAAGATTTGAAGACTGAACCTTTATCTCCTTAA
- Protein Sequence
- MARAFICDYCSRSFTRKYNLQTHIENCHITASSNCELCDQQFGSPSGLQLHLSRGHNRHGQPFPECDICGRVFTRKQNVTSHMITVHLQGIGPEIRCRTCDKTFTTERNLKRHVKLLHNPDLKYPTCDECHKVFKSKHSLVTHIQATHNHIDRTIKCPMCDKVYTNNRNLKRHVEMLHGEKEDHKCHICPKTYTSNQSLKRHIRTTHNSDEDSLQCEVKLLDSENLEWQSNDSNESYNTDIATCEVCNKSFAGESLLRHHVKNEHPFDVFYDYCKRYMETMASRKQLTINTQNLFKCEFCLSAFFNVYELKEHMKVNHDIEYNSCTCNVCFSKFFSKENLMEHKTICLPPRDVNFCNYCDKLFTEISSLEFHTRIFHPQAQLADPNISSTKSDDASDHSSFKCVHCNRIYYSDRSLKHHIKLKHTTDELVKCIYCNKICNNKYYLASHIKIVHSVVDLSKCDYCDKMFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTSFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSKEALKIHLETKHLAEDEIYKCEECNVVFKGSLNFEEHNEVAHSYLNVVTKQKTLPLPRCVICMKDFSTRKTLKRHIKKFHEEFHAEDLANFGCQNRELNINCEDCFKNINNEYYINVYNNVKHDKDAVIFECETCNSSCNALEFSIQRHRFVGDRHKAKVIMSDLCTTQMSDDEVLHSELGPLLEYMEAESTTADINSDPEVVESIIKVELEEICSEDLKTEPLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00666706;
- 90% Identity
- iTF_00207178;
- 80% Identity
- -