Bstr022871.1
Basic Information
- Insect
- Biston stratarius
- Gene Symbol
- -
- Assembly
- GCA_950106695.1
- Location
- OX467121.1:5538666-5541026[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.8e-06 0.00043 21.1 4.0 1 23 5 28 5 28 0.95 2 19 0.00024 0.017 16.0 0.1 2 23 34 56 33 56 0.95 3 19 4.3e-05 0.0032 18.3 0.2 2 23 65 87 65 87 0.97 4 19 3.7e-05 0.0027 18.5 2.3 2 23 96 118 95 118 0.95 5 19 7.9e-05 0.0058 17.5 4.2 2 23 126 148 126 148 0.94 6 19 6.8e-07 5e-05 24.0 2.0 2 23 157 179 156 179 0.96 7 19 2e-06 0.00014 22.6 4.9 1 23 185 208 185 208 0.98 8 19 0.00027 0.019 15.8 0.6 1 23 243 266 243 266 0.96 9 19 0.009 0.65 11.0 0.9 1 23 296 319 296 319 0.98 10 19 0.27 20 6.4 2.3 2 20 327 345 326 347 0.92 11 19 0.015 1.1 10.3 1.6 2 23 356 378 356 378 0.95 12 19 0.02 1.4 10.0 5.9 1 23 402 425 402 425 0.97 13 19 0.00024 0.018 16.0 0.7 2 23 432 454 431 454 0.96 14 19 1.3e-05 0.00093 20.0 2.0 2 23 461 483 460 483 0.94 15 19 0.0073 0.53 11.3 2.2 1 23 489 512 489 512 0.97 16 19 0.19 14 6.9 7.1 2 23 520 542 520 542 0.95 17 19 0.00018 0.013 16.4 0.1 1 23 549 572 549 572 0.97 18 19 0.025 1.8 9.6 0.3 1 23 579 602 579 602 0.87 19 19 0.00014 0.01 16.7 2.4 2 23 618 640 618 640 0.97
Sequence Information
- Coding Sequence
- atggCCCATGCCTTCATTTGCGACTATTGTAGTCGCTCTTTTACAAGAAAATACAATTTACAGACACACATTGAAAATTGCCATATCACTGCGTCAAGCTACTGTGAAATCTGTGATCAAAAATTTGGAAGTCCCAGTGGCTTACAATTACACCTCTCGAGAGGTCACAACAGGCATGGCCAACCATTTCCTGAATGTGATCTTTGCGGTCGAATTTTCACGAGAAAACAGAACATAGCGTCTCATATGATTACTGTCCATTTACAAGGCATCGGGCCAGAGATTCGGTGTAGAACTTGCAGTAAAACCTTTACTACAGAAAGAAATTTGAAAAGACACGTCAAATTATTACACAATCCAGACTTAGAATATCCTACCTGTGATGAATGTCACAAGACTTTCAAAAGTAAACATTCACTAGTCTCTCATATACAGGCGACTCACAATAATCGTACAGACAGAACTATCAAATGTCACATGTGCGATAAAGTGTACACTAATAATAGGAATCTTAAACGACACATTGAGATGTTGCACGGGGAGAAAGAAGACCACAAATGCCACATTTGTCCCAAAATCTACACGTCTAGTCAAAGCCTTAAGCGACATATCAGGACAACGCACAATTCTGATGAAGACAGTCTACAATGCGAAGTAAAATTGTTAGATTCCGAGAATTTAGAATGGCAAAGCAATGATTCTATTGAATCTTATAACACTGAGATATTCACGTGCGAGGCTTGCAACAAATCGTTTTCGGAAGAGTCTCTTTTGCGGTACCATGTTAAAAATGAACATCCTTTCGAATTCTTCTACGATTACTGCAAACGATACATGGAGACAATGGCTAACAGAAGACAACTGACGATCAATTCGCAGAATCTCTTCAAATGTGAATTCTGCCTCTCGGCTTTCTTCAATGTTTATGAACTTAAAGAGCACATGAAAGTGAATCATGATATCGAATACAATTCGTGCACTTGTAACGTGTGTTTCTCcaagttttttagtaaagaaaACTTGATGGAACATAAGACGATCTGCTTGCCACCGCGCAATGTCAACTCTTGCAATTATTGTGATAAGCTCTTCACCGAGACCTCGAGTTTACAGTTCCATACTAGAATATTCCATCCCCAAGCGCAGTTAGCCGATCCAAACATAAGTTCTACCAAATCTGATGACACCTCAGATCACAGCTCGTTTAAATGCGTCCATTGCAATCGGATATATTACAGCGATAGGTCTTTAAAGcatcatataaaattaaaacacacgACAGACGAGGTAGTCGAATGTGTTTACTGTAACAAAatctgtaacaacaaatactatcTCGCGTCTCATATCAAAATCGTGCACAGCGTCGTAGATTTATCGAAATGTGACTATTGTGATAAAATGTTCAAATCCAAGCGTAATATTCGAAGGCATATTGAGTACACGCACATGGGAATGCAAAGGTACAAGTGTATCGAATGCGAAACCCTTTTCAAAGAAAAGCGCAGTCTTCGCAAACACGTGCGAACTAAGCATCCTAACTCTGCATCATTCCCTCAATGCCATATTTGCCATAAGAGATTCGAGTCCGCAAAATCCTGCAAAATACATTTGAAACTTCTCCATTCATTCAATATGAACACATATCCTTGCGACTTGTGTTCAGTGTCATTTGACTCGAAAGAGGCTTTGAAAATACATTTGGAGACGAAACATTTGGCTGAGGATGAAATTTACAAATGCGAAGAGTGCAATTTAGTATTTAAAGGGTCTCTAAAATTCGAGGAGCACAATGATGTAATGCACTCTTACTTAAATGCCGTTTCAAAACCAAAGATTTTGCCGTTACCACGCTGCGTGATATGTGTGAAAGACTTCAGCACGCGGAAAACTTTGAAACGCCACATAAAAAAGTTTCACGAGGAATTCCACGCGGAAGATCTTGCGAACTTTGGTTGCAGAAACCGTGAATTAAACGTCAATTGCGAAGATTGTTTGAAGAACATTAACAATGATTTCTACATCAACGTGTATAACAGCGTCAAGCATAATAAAGACGCTGTCATTTATAAATGCGAGACGTGTAATTCTTCTTGTAATGCTCTAGAATTTTCGATACTAAGGCGTAGATTTGTAGGTAATGGGCATAAGGCAAAAGTGATCATGAGTGATTTGTGTACGACTCAAATGAGCGATGATGAAGTGTTTCATTCCGAATTGGGGCCGCTACTCGAGTACATGGAAGCAGAGAGTACGACTGCAGATATCAATTCTGATCCAGAAGAGGTAAAAACCATTATTAAAGTGGAATTAGAGGAAATTAGTTCGGGAGATATGAAGACTGAACCTGTATCTCCTTAA
- Protein Sequence
- MAHAFICDYCSRSFTRKYNLQTHIENCHITASSYCEICDQKFGSPSGLQLHLSRGHNRHGQPFPECDLCGRIFTRKQNIASHMITVHLQGIGPEIRCRTCSKTFTTERNLKRHVKLLHNPDLEYPTCDECHKTFKSKHSLVSHIQATHNNRTDRTIKCHMCDKVYTNNRNLKRHIEMLHGEKEDHKCHICPKIYTSSQSLKRHIRTTHNSDEDSLQCEVKLLDSENLEWQSNDSIESYNTEIFTCEACNKSFSEESLLRYHVKNEHPFEFFYDYCKRYMETMANRRQLTINSQNLFKCEFCLSAFFNVYELKEHMKVNHDIEYNSCTCNVCFSKFFSKENLMEHKTICLPPRNVNSCNYCDKLFTETSSLQFHTRIFHPQAQLADPNISSTKSDDTSDHSSFKCVHCNRIYYSDRSLKHHIKLKHTTDEVVECVYCNKICNNKYYLASHIKIVHSVVDLSKCDYCDKMFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFDSKEALKIHLETKHLAEDEIYKCEECNLVFKGSLKFEEHNDVMHSYLNAVSKPKILPLPRCVICVKDFSTRKTLKRHIKKFHEEFHAEDLANFGCRNRELNVNCEDCLKNINNDFYINVYNSVKHNKDAVIYKCETCNSSCNALEFSILRRRFVGNGHKAKVIMSDLCTTQMSDDEVFHSELGPLLEYMEAESTTADINSDPEEVKTIIKVELEEISSGDMKTEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00666706;
- 90% Identity
- iTF_00206306;
- 80% Identity
- -