Basic Information

Gene Symbol
PAXBP1
Assembly
GCA_951394125.1
Location
OX596028.1:64094543-64107578[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.1e-29 9.5e-26 91.5 0.3 4 272 616 823 614 825 0.93

Sequence Information

Coding Sequence
atgtctcttttccgaaaaccaaaaaaaacaatacaacgTCGAGTATTTTCAACATTTGATGATGAAGATGGTGatcattttacaaaaagtgatataggaaattcaaagaaaatcgacGTGGACGAAactcgtaatttaaaaaaaagagataagttCCATGAGAAGACATTAAAAAATGATCTAACAGAccccaaaatatcaaaaacaaaatcattgctAAGTTTTGCGGATGACGatgaGGAAGATGAGGTTTTTCAAGTTCGAAAATCTTCCCATAGTAAAAAAGTTATGCGTATGATGGACAAAGAACGGcgtaaaaaaaaggcaaaagaaGGAAGAGACTACGATCACGATTCTATAAACTATTCATCACAGCAACATCATGAAAACGGCACGGGAGCAACATATTCAACTGAAGCTCAAACTGCTAGCTCAAAAAGTaaaggtgatgaaaaatttctgtTGACCACGTCGTCCGTTTCATCAGAacaaagtaaaagtaaaaaatctgATAATATTGAAACAGAAATACGCACAGACGACTTTGTGCTTGTTGTTAAAAAGTCAGATCCGGCACTTATTCTCAATGGAAGAGCTGCATTTTGTGCTGGAAAAGATGATATGTCTGATGAAGACGATGATAGAGTTAGTGGGGATGATGCTGATAGCGAACATATGTTTACGAAACCTGAAAATCTTAAACAAATGCTTGAAAGTGGCTCGATTCCAGATGCTGCCATGATTCATGCAGCAAGAAAACGCAGACAGAAGGTCCGCGAACAAGgtgttGTTATTCCAGTTGAAGAACctaaaaatgtatcaaataaaaaaggaaagcgAATCAATCGAGAAGATGAAGTGGAAAATTCTGATGAAGAAGATCGTGTTGATATGAATGCACTTACTGGGAAAAAAGAGCTCGAAGAACGGCGTGAACAATTTTATTCTGTTGAGAATGATTATTCCGATGATGATTCGGATCGTGAAACCAATGAATGGGAAAACCAACAAATTCGAAAAGGTGTAACTGGAGCacagCTCTTAACAGCACAACAAGAGTCAGTCTTATCAAGATTTATTATAAAGTCCTCAAACAATCCGACAGAGTCTCCATTACCTCTGTCGACCTCTACGCTTTTAGATGAGGCTTACGCAAGGAATTCTTTTGATAAACCACGTCAATTAATAAGTTCCactattaaaaaagaaaacaaaatatcggcGCTAAGAAAACCTCAAGAAATAACAGATTCAATAAAAACAAGattaataaaattaaggGAACTTAATGGAAAACATAAATCAGATATTGAAAGAATATCAGCAGAGATGAAGGTTTTAAAACTGGAAGAACTAGACTGTTCACAAAAAGCTCCAACTGCGGCAGCGAAATATCGTTTCTATCAGGAAATAAATGGATACGTCAGCAACCTCATTGAGTGTCTAAATGAgaagGCACCCAAAATAAATGAACTAGAGAAACGTGCTATccaagttttatcaaaacatCCTAATTTCTTAATTGAAAGGCGAAGACAAGACGTTCGAGACCAAGTAAAAGAAATGACAGAATCTGCAAGCAaatgtTTGGGTTCAGCTCTTAGAAGGGGTCCGGAACatgaagaaataattaaaagaacaGCCGAACGTGAATGCAGAAGAACTCGAAGGCGCTGTGAAAGAGAGAAAAGTGACATTAGTAGTACACATTTAGATGGAATGTCAAGTGACGATGAAGTTTCTGATCATGTTCTTGAACAGAAGAAACTATCGATAgACCAATTGGAGGTGGAAGTAGATGACTTGTTCGCAGATGCTGGAGATGATTTCTGCAAACCAGAACTTATACTctcaaaatttaatgtttggCGAAAGACAGATATGGAATCATATAAAGATGCTTTTGTTAGTCTTTGTCTACCGAagATCATGGGCCCTATCGTAAGAACTGAAACACTAATTTGGAATCCTTTAAATGAAGACTACAAAGACATTGAAAATATGAACTGGTATTCTGCATGTATGCTTTATGGATGGTCGGAAAAAGAAACAGAAGAGTCTTTGCTAGTTGATCCAGATATGAAACTAGTGCcaacaataattgaaaaaatattacttcCAAAAGTTACAGaaattgtaAGTTATTGCTGGGATCCGATGTCAACAACACAAAGTCTTCGGTTGATTGGATTTATTAATCGCATTGGCAGAGAATACCCAATTAGGCAATACTCAAACCAACTTCAGCTACTTTTCAATGCCattatagaaaaattgaaatcagCTCTTGATAATGATGTTTTCATACCAATATTTCCAAAACAAGTTCAAGAAGCAAGGACATCATTTTTTCAGAGACAACTTTGCAGcggtttaaaattatttagaaatttcCTTAGCTGGCAAGGAATTATAGCAGACAAAGCATTACGGGACCTAGCTATATCTTCCCTTTTGAATCGGTACCTGCTTTTAGCCACAAGAaTGTGTTCTACCAACGATGCACTTATCAAAGCTCATATTGTGGTGAATACTCTTCCAACGGCTTGGTTACAACCAGAATCCGAAACACTCCAGAACCTGCAACCTCTTATAACCTTTATAAAGTCAATATTTGAAAGTTTCGATCCCAGAAACCCATTGCATatGCAATCGTGTGATAAAGCAAAGAAAATCCTTCAACGACTGCATAGTTGGTAA
Protein Sequence
MSLFRKPKKTIQRRVFSTFDDEDGDHFTKSDIGNSKKIDVDETRNLKKRDKFHEKTLKNDLTDPKISKTKSLLSFADDDEEDEVFQVRKSSHSKKVMRMMDKERRKKKAKEGRDYDHDSINYSSQQHHENGTGATYSTEAQTASSKSKGDEKFLLTTSSVSSEQSKSKKSDNIETEIRTDDFVLVVKKSDPALILNGRAAFCAGKDDMSDEDDDRVSGDDADSEHMFTKPENLKQMLESGSIPDAAMIHAARKRRQKVREQGVVIPVEEPKNVSNKKGKRINREDEVENSDEEDRVDMNALTGKKELEERREQFYSVENDYSDDDSDRETNEWENQQIRKGVTGAQLLTAQQESVLSRFIIKSSNNPTESPLPLSTSTLLDEAYARNSFDKPRQLISSTIKKENKISALRKPQEITDSIKTRLIKLRELNGKHKSDIERISAEMKVLKLEELDCSQKAPTAAAKYRFYQEINGYVSNLIECLNEKAPKINELEKRAIQVLSKHPNFLIERRRQDVRDQVKEMTESASKCLGSALRRGPEHEEIIKRTAERECRRTRRRCEREKSDISSTHLDGMSSDDEVSDHVLEQKKLSIDQLEVEVDDLFADAGDDFCKPELILSKFNVWRKTDMESYKDAFVSLCLPKIMGPIVRTETLIWNPLNEDYKDIENMNWYSACMLYGWSEKETEESLLVDPDMKLVPTIIEKILLPKVTEIVSYCWDPMSTTQSLRLIGFINRIGREYPIRQYSNQLQLLFNAIIEKLKSALDNDVFIPIFPKQVQEARTSFFQRQLCSGLKLFRNFLSWQGIIADKALRDLAISSLLNRYLLLATRMCSTNDALIKAHIVVNTLPTAWLQPESETLQNLQPLITFIKSIFESFDPRNPLHMQSCDKAKKILQRLHSW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00665632;
80% Identity
-