Echr023431.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595858.1:9772087-9773883[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0023 36 5.3 0.0 21 52 154 185 150 187 0.87 2 7 0.0067 1e+02 3.9 0.0 23 52 184 213 180 215 0.89 3 7 0.24 3.6e+03 -1.1 0.0 23 45 212 234 209 238 0.77 4 7 0.00043 6.6 7.7 0.1 22 52 239 269 234 271 0.89 5 7 0.023 3.6e+02 2.1 0.0 23 52 268 297 265 299 0.86 6 7 0.00017 2.6 9.0 0.2 16 46 318 348 305 351 0.87 7 7 0.001 16 6.5 0.0 21 46 351 376 348 382 0.88
Sequence Information
- Coding Sequence
- ATGAGTACTTCTGTGTGCAGAGTTTGTCTTGCCGGCGATATCAGAATGCACTGCATTGAAGATATCCAACTACTAGAAACATACGAAAAACTAACAAGTGTCAAGGTGACACACACAACGTTCAACATGCTAAAGCTagacaacattaaaaatttgtcAGTAACACCTAGACAGTGCATGTCTATAGATTATAACTTGTACACCGGAAAAACTGTTGTAACTGATATGGAACAACAAGgagttttaaaaaaagaaacaacagCTGAAGATAAAGGAATGATTGAAATTGGGAAGAGTGCAGTTGTAGATGATTTTGAAAGTGGTCATACATTCATAACGAAACGGTCAATCGAAGGGAGCGGTGAGATTAACAACATGCATTCGTTTTTCTATTGTGATCTATGCAAGAAAGGCTATACCTATAAACAAAGCCTTGTGTTACATCTAAAAACTCActctggagaaaagccttacgcctgcaacatatgtgataaggcattcagtcGCAAAGATAATATGGTAGTACACATGCAACTTCACACCGGAATAAAGCCCTACGCCTGCAAcatatgtgataaggcattcagtcGCAAAGATAATTTGGTAGTACACATGCAACTTCACACCGGAATAAAGCCCTACGCCTGCAACATATGTGGTAAGGCATTCTATAACAAAGGTTATTTCAGAGTACACTTGCGAGTGCACACCAGAAAACAGCCTAACGCCTGCAAcatatgtgataaggcattcagtcACAAAAGTAATTTGGTAGTACACATGCAACTTCACACCGGAATAAAGCCCTACGCCTGCAAcatatgtgataaggcattcagtcGCAAAGATAATATGATAGTACACATGCAACTTCACACCGGAAAAAAGCcctacgcctgcaacagatgtgataaggcattctaTAAAAAAGATAACTTGACAATACACATGCGAATTCACACTAGAGTTCATCAGCCTTACATATGCAACATATGTGGTAAAGCAGCCAATAACAAAGTTAATTTGAGAGTACACTTGCGAATGCACAACAGAGAACAGCCTAACGCCTGCAACTTATGTGATAAGGTATACAAACGAAAAGGGtttttgacaaaacacatgcgAATTCACACCAGAGAAACGCCACAGCTGTGA
- Protein Sequence
- MSTSVCRVCLAGDIRMHCIEDIQLLETYEKLTSVKVTHTTFNMLKLDNIKNLSVTPRQCMSIDYNLYTGKTVVTDMEQQGVLKKETTAEDKGMIEIGKSAVVDDFESGHTFITKRSIEGSGEINNMHSFFYCDLCKKGYTYKQSLVLHLKTHSGEKPYACNICDKAFSRKDNMVVHMQLHTGIKPYACNICDKAFSRKDNLVVHMQLHTGIKPYACNICGKAFYNKGYFRVHLRVHTRKQPNACNICDKAFSHKSNLVVHMQLHTGIKPYACNICDKAFSRKDNMIVHMQLHTGKKPYACNRCDKAFYKKDNLTIHMRIHTRVHQPYICNICGKAANNKVNLRVHLRMHNREQPNACNLCDKVYKRKGFLTKHMRIHTRETPQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663265;
- 90% Identity
- iTF_00663265;
- 80% Identity
- iTF_00663265;