Echr023431.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595858.1:9772087-9773883[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.019 16 6.4 0.6 14 37 127 151 120 153 0.75 2 9 0.0028 2.3 9.1 0.1 18 39 159 177 153 180 0.83 3 9 0.0032 2.6 8.9 0.1 19 39 188 205 184 208 0.84 4 9 0.13 1.1e+02 3.7 0.9 19 29 216 226 212 236 0.83 5 9 0.0012 0.98 10.2 1.1 12 40 237 262 226 264 0.82 6 9 0.00085 0.71 10.7 0.1 19 40 272 290 268 296 0.91 7 9 1.5 1.2e+03 0.3 1.3 18 40 299 321 292 325 0.74 8 9 0.001 0.86 10.4 2.7 6 40 316 347 311 351 0.89 9 9 0.00085 0.7 10.7 1.0 14 38 352 377 347 380 0.81
Sequence Information
- Coding Sequence
- ATGAGTACTTCTGTGTGCAGAGTTTGTCTTGCCGGCGATATCAGAATGCACTGCATTGAAGATATCCAACTACTAGAAACATACGAAAAACTAACAAGTGTCAAGGTGACACACACAACGTTCAACATGCTAAAGCTagacaacattaaaaatttgtcAGTAACACCTAGACAGTGCATGTCTATAGATTATAACTTGTACACCGGAAAAACTGTTGTAACTGATATGGAACAACAAGgagttttaaaaaaagaaacaacagCTGAAGATAAAGGAATGATTGAAATTGGGAAGAGTGCAGTTGTAGATGATTTTGAAAGTGGTCATACATTCATAACGAAACGGTCAATCGAAGGGAGCGGTGAGATTAACAACATGCATTCGTTTTTCTATTGTGATCTATGCAAGAAAGGCTATACCTATAAACAAAGCCTTGTGTTACATCTAAAAACTCActctggagaaaagccttacgcctgcaacatatgtgataaggcattcagtcGCAAAGATAATATGGTAGTACACATGCAACTTCACACCGGAATAAAGCCCTACGCCTGCAAcatatgtgataaggcattcagtcGCAAAGATAATTTGGTAGTACACATGCAACTTCACACCGGAATAAAGCCCTACGCCTGCAACATATGTGGTAAGGCATTCTATAACAAAGGTTATTTCAGAGTACACTTGCGAGTGCACACCAGAAAACAGCCTAACGCCTGCAAcatatgtgataaggcattcagtcACAAAAGTAATTTGGTAGTACACATGCAACTTCACACCGGAATAAAGCCCTACGCCTGCAAcatatgtgataaggcattcagtcGCAAAGATAATATGATAGTACACATGCAACTTCACACCGGAAAAAAGCcctacgcctgcaacagatgtgataaggcattctaTAAAAAAGATAACTTGACAATACACATGCGAATTCACACTAGAGTTCATCAGCCTTACATATGCAACATATGTGGTAAAGCAGCCAATAACAAAGTTAATTTGAGAGTACACTTGCGAATGCACAACAGAGAACAGCCTAACGCCTGCAACTTATGTGATAAGGTATACAAACGAAAAGGGtttttgacaaaacacatgcgAATTCACACCAGAGAAACGCCACAGCTGTGA
- Protein Sequence
- MSTSVCRVCLAGDIRMHCIEDIQLLETYEKLTSVKVTHTTFNMLKLDNIKNLSVTPRQCMSIDYNLYTGKTVVTDMEQQGVLKKETTAEDKGMIEIGKSAVVDDFESGHTFITKRSIEGSGEINNMHSFFYCDLCKKGYTYKQSLVLHLKTHSGEKPYACNICDKAFSRKDNMVVHMQLHTGIKPYACNICDKAFSRKDNLVVHMQLHTGIKPYACNICGKAFYNKGYFRVHLRVHTRKQPNACNICDKAFSHKSNLVVHMQLHTGIKPYACNICDKAFSRKDNMIVHMQLHTGKKPYACNRCDKAFYKKDNLTIHMRIHTRVHQPYICNICGKAANNKVNLRVHLRMHNREQPNACNLCDKVYKRKGFLTKHMRIHTRETPQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663305; iTF_00663711;
- 90% Identity
- iTF_00663305; iTF_00663711;
- 80% Identity
- iTF_00663305; iTF_00663711;