Etri012704.2
Basic Information
- Insect
- Epirrhoe tristata
- Gene Symbol
- -
- Assembly
- GCA_951394285.1
- Location
- OX596150.1:3526111-3529243[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0028 35 5.1 0.2 15 52 208 245 195 246 0.81 2 4 0.0079 99 3.6 0.1 22 48 243 269 240 273 0.85 3 4 9.4e-05 1.2 9.8 0.1 16 47 328 359 324 364 0.90 4 4 3.1e-07 0.0039 17.7 0.1 22 48 362 388 359 390 0.90
Sequence Information
- Coding Sequence
- atgttgaacaaCAAGTGCAGAGTTTGTCTCGCTGATGAGGCTAACCATCCTATTTTTGAGAACATAGAAAGTGAAGAGAGCTTCCACTTCAAATTCTTTCAGTGTTTCAAGGTAGAGGTTAAAGATGTAGAAGGATATCCTCGTAATATATGTGAATTATGTAATGATACAGTAAACTCTAcaattaatttcataaaaaaatactacacaAGCTGCAAGCTCTTAAGCAAACTTGCAGTAAAAAAGGAAGCCAGCAGCGACAATTCTGATGATGAAGTAATAAAAGatgaaattgaaatagaaATTGTTAAACGTGAACCTGAGACTGAGGCAGTTTGGGAAGATCCATTAGATGATTCTATAGAGTTTGAACtcaataacattaaaaaagcACCAAAACTTAATCAGAAAAGACTTGCagaattaaagaaaaaacttaAGAATCTAAAGGAAATTAACTTTAAAAGAAAACCTGTGCCAAAAACGAATAATAACACTTCATCTAATTTAGAAGCAAATTTGGATGAGGGTCAAGAAAGTCCCCATTCAAGTTTACCCAATAAACTGAAAGAGGAGAAACCAGAAAAGgctacaagaaaaaaaagtaaaaaatccgTTTTACCAAAATCAAAAGAACCACAAAATGAAACACATCCATGTGATTTCTGCGGAAAGGCATTTGGAAATAAGCACACACTGAGGAATCATATGAAAGCAAGTCATTTTAATACACCTCGAGAATGTCCTGAAtgtcaaaaagttttaaactCCGACTACTATCTTCAAAAACATATGAAAAGAATTCACggggataaaaaaataatatgtgaCACTTGTGGAAAAGGATTTGCCTTTATAGGAGAGTTGAATACTCATGTTAAAACTGCACATTTAAAACAACGTCCCAAACTTACAAAGAAGTATACATGTGACCAATGTGCTAAGaattttttcaattcaaaagcACTGATTATACATATGAGATCTGCACACACAGgggAAAGGCCAGCTGTATGTACAGTGTGTGACGCTCGCTTTTACCATGAAGAATATCTAAAGCAACACATGAGGTTGCACACAGGAGAGACTCCATACAAATGCCCTATCTGCTACCGTGGGTATGCACAAAGCGGAAACTTAAAAAGTCATATATCACATAACCACCGACTGGAAGATCTTAGCCCAGAACTTGTGCAAAATTTGAATCCAAACTGGTTGAAGTACTTAAAGAAGCCATAA
- Protein Sequence
- MLNNKCRVCLADEANHPIFENIESEESFHFKFFQCFKVEVKDVEGYPRNICELCNDTVNSTINFIKKYYTSCKLLSKLAVKKEASSDNSDDEVIKDEIEIEIVKREPETEAVWEDPLDDSIEFELNNIKKAPKLNQKRLAELKKKLKNLKEINFKRKPVPKTNNNTSSNLEANLDEGQESPHSSLPNKLKEEKPEKATRKKSKKSVLPKSKEPQNETHPCDFCGKAFGNKHTLRNHMKASHFNTPRECPECQKVLNSDYYLQKHMKRIHGDKKIICDTCGKGFAFIGELNTHVKTAHLKQRPKLTKKYTCDQCAKNFFNSKALIIHMRSAHTGERPAVCTVCDARFYHEEYLKQHMRLHTGETPYKCPICYRGYAQSGNLKSHISHNHRLEDLSPELVQNLNPNWLKYLKKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00662517; iTF_00661899; iTF_00661640;
- 90% Identity
- iTF_00662517; iTF_00661899; iTF_00661640;
- 80% Identity
- iTF_00662517;