Ealt010027.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751385.1:8358066-8360541[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00012 1.6 9.5 2.6 15 52 208 245 195 246 0.82 2 4 0.013 1.8e+02 2.9 0.1 24 48 245 269 243 273 0.86 3 4 0.00013 1.7 9.4 0.1 16 46 328 358 325 361 0.90 4 4 3.4e-05 0.46 11.2 0.1 22 48 362 388 359 391 0.90
Sequence Information
- Coding Sequence
- ATGTTGAACAAGTGCAGAGTTTGTTTATCTGATGAGGCCAACTATCCTATTTTTGAGAACATAGAAAGTGAAGAGAGCGTCCACTTCAAATTCTTTCAGTGTTTCAAGGTTGAGGTTAAAGATGTAGAAGGATACCCTCGTAATATATGTGAATCATGTAATGATACTGTAATCTCTACAATCAATTTCATAAACAAATACTACACAAGCTGCAAGCTCTTAAGCAAACTTGCAGTTGTTAAAAAGGAAACCAGCAGTGACAATTCTGATGATGAAGTAACAAAAGATGAAATTGAAATAGAAATTGTCAAACGTGAACCTGAGACAGAGACAGTTTGGAGGGACCCATTAGACAATTCAATAGAGATTGAACTCACTAACATCACAAAAGAACCAAAACCTAATGTGAAAAGACTCGCAGAATTAAGAGATAAACTGAAGAATTTAAAGGAAATCAACTTTAAAAGAAAACCTGTgccaaaaactaacaaaacaacTGCATCTAATTTAGAAGCAAAGTTGGATGAGGGTCAAGAAAGcCCCCCTTCAAGTTTACCCAATGAACTGAAAGAGAAGAAACCAGAAAAGGCtacaagaaaaaaaagtaaaaaaccaGTTTTACCAAAATCAAAGGAGCCACAAAATGAAACGCATCCATGTGATTTCTGCCGAAAGGCATTTAGAAATAAGCACACACTGAGACATCATCTGAAAGCAAGTCATTTTAATACACCTAGAGAATGTCCTGAAtgtcaaaaagttttaaactCCGACTACTACCTACAAAAACATATGAAAAGAATTCACGGagataaaaaattaatatgCGACACATGTGGAAAAGGATTTGCCTTTATAGGCGAGTTGAATACTCATGTAAAAACAGCACATTTAAAACAACGTCGCAAACTCACAAAGAAGTATACATGTGACCAATGTGCTAAGAATTTTTTCAATTCTAAAGCACTGATTATACACATAAGATCTGCACACACAGGTGAAAGACCAGCTGTATGTACAGTGTGTGACGCTCGTTTCTACCATGAAGAATATCTAAAGCAACACATGAGGTTGCACACAGGAGAGACACCATACAAATGCCCGGTCTGCAACCGTGGGTATGCACAAAGCGGAAATTTAAAAAGTCATATTTCAAATAACCACCGTCTGGCTGATCTAAGCCCAGAACTTGTGCAAAACATGAATCCAAACTGGTTGAAGTACCTAAAGAAGCCATAA
- Protein Sequence
- MLNKCRVCLSDEANYPIFENIESEESVHFKFFQCFKVEVKDVEGYPRNICESCNDTVISTINFINKYYTSCKLLSKLAVVKKETSSDNSDDEVTKDEIEIEIVKREPETETVWRDPLDNSIEIELTNITKEPKPNVKRLAELRDKLKNLKEINFKRKPVPKTNKTTASNLEAKLDEGQESPPSSLPNELKEKKPEKATRKKSKKPVLPKSKEPQNETHPCDFCRKAFRNKHTLRHHLKASHFNTPRECPECQKVLNSDYYLQKHMKRIHGDKKLICDTCGKGFAFIGELNTHVKTAHLKQRRKLTKKYTCDQCAKNFFNSKALIIHIRSAHTGERPAVCTVCDARFYHEEYLKQHMRLHTGETPYKCPVCNRGYAQSGNLKSHISNNHRLADLSPELVQNMNPNWLKYLKKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00662752;
- 90% Identity
- iTF_00662752;
- 80% Identity
- iTF_00661640;