Ealt022174.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751402.1:2360632-2363073[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.4 3.6e+02 2.5 0.1 2 23 101 123 100 123 0.86 2 15 0.028 1.9 9.7 0.7 3 23 151 171 149 171 0.96 3 15 0.0019 0.13 13.3 0.3 1 23 175 198 175 198 0.97 4 15 0.098 6.6 8.0 2.3 1 19 202 220 202 221 0.94 5 15 0.028 1.9 9.7 0.4 3 23 248 269 247 269 0.95 6 15 0.15 10 7.4 0.1 2 23 294 316 293 316 0.93 7 15 0.062 4.2 8.6 1.3 3 23 341 361 340 361 0.98 8 15 0.00021 0.014 16.4 1.4 1 21 365 385 365 386 0.96 9 15 0.044 3 9.1 0.2 1 23 427 450 427 450 0.93 10 15 1.7 1.1e+02 4.1 0.3 2 23 476 498 475 498 0.93 11 15 0.0052 0.35 12.0 0.5 2 23 522 543 521 543 0.94 12 15 0.0021 0.14 13.2 0.0 1 23 547 570 547 570 0.97 13 15 0.2 14 7.0 0.5 1 23 574 597 574 597 0.97 14 15 0.00033 0.022 15.7 4.0 1 23 636 659 636 659 0.97 15 15 0.018 1.2 10.3 0.5 1 23 669 692 669 692 0.90
Sequence Information
- Coding Sequence
- ATGAAACTAACAAGTATATCTGCTAAGCATCACACATATCTGCGAGTGACAGAGATTTTTTCTTTTCTAGTTCGTGATACGGCGAAACGGAACGCTGAAGTTGTGTTACAATATTCGACATTGTACCCGTTCAGGTTGCGCGGAAAAATCTTGATCTGCGTTTACTGTTGTGACGAATTCGAGGAGCCTGACGAATACAGATGTCACATGGATTCGACGCACAAGGAAGCAATTCTCTACACTGCTTTCGCTCACACCGGCAGAAACAGGGACTACCTCAAGGTAGACTGTGTCAATCTCAAATGCAGAATATGCAACGCACCCTTTCTAACAGTTGTTGAAATCGCGAAGCACCTTAAAGAAACCCACGTCAATGAAGACATCAAGCAGATGGACTTGAGCTTTGAAGTTGCCTTACACCCATACCGTTTAACTAAAGACAAATGGTTCTGTGTCCTTTGCAACATGAAGTTACCGTCATTGACTAAACTTCGAAGACACATGTCTTCTCATTACGCGGATTATGTTTGTGATATTTGTGGCCGAAGTTATTTGAAAGTTGATAATTTGCAATATCACGTCAAGTCCTCACATTCGGGAAAATTCCCATGTAGAAAATGTTGGAAGGTTTTTCAAACTAAAGAAGAAAAGAAACATCATACTCCACAGAGGCGTAATGCCGAACTGATTCTTAAGCACTCAACTGCTTATGCGTTCAAAACTCGATTTAGTCAGATACTATGCGCTTTCTGCCACGAAGAGTACAACACTCTGACAGAATTGCGATATCACATGGCCATTGACCACGTTAATTCAGATTATGACAACGTCTTCTATAGAATAAACGACAATTTAATCAAAGTAGACATAACTGATTTAAAGTGTAAGATATGCTCTCTTGAAGTCCCTGATATAGACTCATTGATGACTCATTTGTCTCAGGAACATCAGAAACCCGTAAAATTTAATGCCCGGTTCGGAGTACTTCCTTACAAGCAGAATTCAGAGAATCAATGGCTATGTGTCTACTGTCAGAGACATTACTCTGAATTTGTGGCTTTTAAACGTCATATAGGAACACATTTTATGAACTTTTCTTGCGATAAATGCGGTACCACTTTTGTATCAGAACATGCTTTACGAGATCATCATCGTCAAGTAAAATGCTTCCGAACTGCCTACCATCCTCGGAACGGGAAGATCATGAGGTCTCGCGGTAATGCTGAGATAATACTACAGTGTTCCACCGCTAATCCCTTTAGGACATGGAAGAATAACTTTAATTGCGTGTTTTGCCGAATTCAAACTAACGATCCCAGCAGTTTGCGAATGCACATGGCAGCCCGACATGCAAACTACGATGTACAATCTGCGTTCTATAAGAAACTAGGCAAAGACTTTCTCAGTGTAGATATAACAGATCTCCAATGTAAACTTTGCTTGGCGCCCCTACAAACTATCGATGCTCTTACACATCACTTGAAAAATGATCATCAACAACCATTCAATTTAGAGGCTCAATTAGGTTTACTACCCTTCAGATTGAACGATGGTTCCGTTTGGAAATGCACAATCTGTCCGAACCAATTCAAAGACTTCATATCACTAAAGAAGCACACTGCTgatcattttcaaaattatgtgTGCGATGCTTGTGGTGAAGGATTTATCACGGAATCTGCGATGATAGCGCATACAAAAATAccacatgaaaataaatatagctGCAGTAGATGTATCGCAACGTTTTCCACTCTAGATGAAAGAAATATCCACGTAAAGACGCAACATACGTCGATGCCATACATGTGCATCTACTGTACTGAAAAGCCAAGGTTTGCTAATTGGGAATTGAGAAAAAAGCATCTAATGGAAGTTCACAACTACAGAACCGGAGCTGATAAATATGAATGCACCACGTGCCAAAAGACCTTCAAGACTAGGTCTGGAAAGTTCAATCACATGACGCGGACGCACAAAATTAAAAAGGATGCAGAGCTTAACTATCCGTGTATCAGTTGCCCGAAAGCGTTTACGACGAAACTGTTTTTAGACAAACACATGGCTAAGAAGCATTTTGATACTTGA
- Protein Sequence
- MKLTSISAKHHTYLRVTEIFSFLVRDTAKRNAEVVLQYSTLYPFRLRGKILICVYCCDEFEEPDEYRCHMDSTHKEAILYTAFAHTGRNRDYLKVDCVNLKCRICNAPFLTVVEIAKHLKETHVNEDIKQMDLSFEVALHPYRLTKDKWFCVLCNMKLPSLTKLRRHMSSHYADYVCDICGRSYLKVDNLQYHVKSSHSGKFPCRKCWKVFQTKEEKKHHTPQRRNAELILKHSTAYAFKTRFSQILCAFCHEEYNTLTELRYHMAIDHVNSDYDNVFYRINDNLIKVDITDLKCKICSLEVPDIDSLMTHLSQEHQKPVKFNARFGVLPYKQNSENQWLCVYCQRHYSEFVAFKRHIGTHFMNFSCDKCGTTFVSEHALRDHHRQVKCFRTAYHPRNGKIMRSRGNAEIILQCSTANPFRTWKNNFNCVFCRIQTNDPSSLRMHMAARHANYDVQSAFYKKLGKDFLSVDITDLQCKLCLAPLQTIDALTHHLKNDHQQPFNLEAQLGLLPFRLNDGSVWKCTICPNQFKDFISLKKHTADHFQNYVCDACGEGFITESAMIAHTKIPHENKYSCSRCIATFSTLDERNIHVKTQHTSMPYMCIYCTEKPRFANWELRKKHLMEVHNYRTGADKYECTTCQKTFKTRSGKFNHMTRTHKIKKDAELNYPCISCPKAFTTKLFLDKHMAKKHFDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00699522; iTF_00704323; iTF_00696716; iTF_00698572; iTF_00701356; iTF_00702285; iTF_00697648;
- 90% Identity
- -
- 80% Identity
- -