Eram017088.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- Zfy1
- Assembly
- GCA_947578815.1
- Location
- OX388222.1:882549-888807[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0005 0.04 15.3 0.4 2 21 132 151 131 152 0.94 2 15 0.44 36 6.0 0.7 3 23 185 205 184 206 0.94 3 15 0.0012 0.1 14.0 0.1 3 23 213 233 211 233 0.96 4 15 0.0002 0.016 16.5 1.4 1 23 269 292 269 292 0.95 5 15 8.1e-05 0.0066 17.8 0.5 1 23 298 320 298 320 0.96 6 15 2.3 1.9e+02 3.7 0.5 1 23 354 377 354 377 0.88 7 15 0.00013 0.01 17.1 1.4 2 21 504 523 503 524 0.92 8 15 0.022 1.8 10.1 0.1 1 23 557 580 557 580 0.94 9 15 4.3e-05 0.0035 18.7 0.4 2 23 585 606 584 606 0.96 10 15 0.73 59 5.3 1.5 2 21 610 629 610 630 0.91 11 15 7.7e-06 0.00062 21.0 1.0 1 23 656 679 656 679 0.95 12 15 0.0011 0.091 14.2 0.4 1 23 685 707 685 707 0.92 13 15 1 82 4.9 0.1 3 23 715 735 713 735 0.97 14 15 0.13 11 7.7 1.8 1 23 741 764 741 764 0.94 15 15 0.014 1.1 10.8 3.4 2 23 771 793 770 793 0.95
Sequence Information
- Coding Sequence
- ATGTTACTGAGAGTTGGAGGCAGGACGCTGTTTTTCGAACAAGCAAGCGCAGTGAACGCAGTTCTCTTCAGCTTGAGCAAAAAATATTTCGTCGCCGAGGACGCTGGCTTGCCTCAAGGCCTCTGCAGGGCGTGCTCCGAGGACACCATAGCCGCCGCCCACTTCAGACAACTCGCCTCCGTCTCCCATCATCACTGGAACAGTGCCGTCGACTCCCTCTCCTGCATACACGACCCCGAAGACGTCATCAGGACGTACTACGTCTTCTACAGCGACGGAGAAATGCTCATAAGGGAGGAGCCAAAAACCATCTCTAAAGACGAGGTGGTTGTCCATCTGAACGAAAAGAGGACCAAACCGAAGAGATCCTATACGAAATCGGCAGGGAAATGCCAGTGTCCGGACTGCTACAAAGACTTCCCTGTTGCTTACAATCTGAACGTCCATTTGAAGAACACGATGAAGCGGGCGTGTATCAGATGCGGGACTGTTTTGGAGAGAGAAAAACTAGCGGATCATCTAGCGAAAGTTCATGGGAAACTCTACGCGGATTGCGACATCTGTTTCAAACTGTTTGATGACGAGGATATACTTAAACAGCACTACGTCACGCATCACAGCCGCTGCTCCTTCGGCTGCCAGATCTGCGGGCGCGGATACACGAACGACAGAGCTCTTAGAGCTCACATGTACGCTCACACCCTGTTCCATTGCATGTCTTGCAACTCAAGCTTCGAGAACCGACGCTGCTACAAACACCATCAGAAGAAATGCAAGTCCGCGCAAGTTCCTACCGCGACAACATTCACCTGCGATTACTGTGGGCACGTCTATAACAAAAAGCCATCGCTCCGCATCCATATAATACAGAAACACTTAAACGTCCTTCCTTATGTGTGCGAAACGTGCGGCAAGCGGACCTCTACGCTAGCACATTTAAGGTCCCACGAAGCGATACACACTACGGAAAGGAAGCTATATAAATGTGCCTGTGGCGCTGAGATGCGGACAGAGCTAGGGTATCACTTGCATCAACGGATCCATACTGGGGAAAAGCCATATGAATGCCAAGAATGCGGTGACCGGTTCCTCTCTGCTTCCAGACGCTTAGATCACATCAAAAGAAGGCACAGGAGTACTAAAGATATGCCCCATGGGTGTGACATGTGCCAAGCTCGGTTCATAATAGACGAGTCGCTCTGCCCCAGCGGCGTGTGCGCAACATGCACCGCCAACGCCATCGCCGCCCAAGAGTACCGCACCCTAGTCGCCGACTCCATCAAAATATGGTCCTTCGCCATCAAACAACTCGAGATCATACCTCTCAACAACTCGCCCTCCGTCAAATCCCTCTGCGCCTTTCTGAGATCAGACAACCTCAACATCCAGGTCGCTAAAGACTATTCCGTGAACGAAAAAACCACTCCTCTACACAGGCTAAAGACTCGCATGAATAGGAAGAAGAGTGACGAGAGAAAGCCAAGGGTACACAGAGCTGGACCTCCCTGCAAATGCACCGATTGTGGCAAAGAGTTCATCAGCCCCTACTACCTCAATGTGCACTTCAAGAACAGCGGTCAGAAAGACGTTTGCATCACCTGCGGAGCTATTTTTCTAAGAGGGAAACAGATGAGGGATCATCTAGTCAAAGTGCATAGGGAAACGGCTTTCTTATGCAAGGAGTGCCCAGCGATATTCAATAACGAAGCTGATGCGAAGAAACATGAAAAGAAGGCGCATAAGACTGGATTGACTTGTGGCGATTGCGGGCGGACGTTCGTGAGGAACGCCTCCTTTGAGACGCATTCGCAAATGCACGCTGTCCGGACGTGTCGAGCTTGCGGCATACAGTTCACCAATCGAGCGTGCTATAGAGAGCATAGGTCCAAGTGCGAGCCTGATGCCAAACCTGACAGGGACACCGTACCTCGCAACAGACGCTCTAACATCCGCGACCCGGCCACTTTTACCTGTGATTACTGCAAGAAGACTTACACGTCCCGGCCTCAACTGAAGAACCACATCCTCTGGATCCATATGGACGTCAGACCCCATCAGTGCCAGTGGTGCGGAAAGCGTTTCTACACACCAGCTCGCCTAGCGGAACACAGCGTGGTCCACACGCGGGAGCGGAACTTCGGCTGCGATATCTGCGGAGCGAAGCTAGTCTCCAAAATGGCGGCCGTGTACCACAGACGCCGGCATACCGGAGAAAAGCCATATCGCTGCGAAGACTGCGGAGACTGCTTCATATCTGCCTCAAGGAGGTCTGAGCACGCTAAGAGAAAGCACGGTAAGGGACCAAGACTGCACTGCACTAGGTGCCCGTCGACTTTCGTTAGGATTCATGAGTTGAAGAGGCATATTGAGAAATCACACAGTCATGTTGTACCTATATATGCGGTGGAAGAATCGAATTAA
- Protein Sequence
- MLLRVGGRTLFFEQASAVNAVLFSLSKKYFVAEDAGLPQGLCRACSEDTIAAAHFRQLASVSHHHWNSAVDSLSCIHDPEDVIRTYYVFYSDGEMLIREEPKTISKDEVVVHLNEKRTKPKRSYTKSAGKCQCPDCYKDFPVAYNLNVHLKNTMKRACIRCGTVLEREKLADHLAKVHGKLYADCDICFKLFDDEDILKQHYVTHHSRCSFGCQICGRGYTNDRALRAHMYAHTLFHCMSCNSSFENRRCYKHHQKKCKSAQVPTATTFTCDYCGHVYNKKPSLRIHIIQKHLNVLPYVCETCGKRTSTLAHLRSHEAIHTTERKLYKCACGAEMRTELGYHLHQRIHTGEKPYECQECGDRFLSASRRLDHIKRRHRSTKDMPHGCDMCQARFIIDESLCPSGVCATCTANAIAAQEYRTLVADSIKIWSFAIKQLEIIPLNNSPSVKSLCAFLRSDNLNIQVAKDYSVNEKTTPLHRLKTRMNRKKSDERKPRVHRAGPPCKCTDCGKEFISPYYLNVHFKNSGQKDVCITCGAIFLRGKQMRDHLVKVHRETAFLCKECPAIFNNEADAKKHEKKAHKTGLTCGDCGRTFVRNASFETHSQMHAVRTCRACGIQFTNRACYREHRSKCEPDAKPDRDTVPRNRRSNIRDPATFTCDYCKKTYTSRPQLKNHILWIHMDVRPHQCQWCGKRFYTPARLAEHSVVHTRERNFGCDICGAKLVSKMAAVYHRRRHTGEKPYRCEDCGDCFISASRRSEHAKRKHGKGPRLHCTRCPSTFVRIHELKRHIEKSHSHVVPIYAVEESN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00412748; iTF_01072855;
- 90% Identity
- iTF_01072855;
- 80% Identity
- -