Cstr021679.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia strobilella
Gene Symbol
Zfx
Assembly
GCA_947568885.1
Location
OX387699.1:9037884-9041929[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.1e-05 0.00067 20.6 0.4 2 21 141 160 140 161 0.94
2 16 0.0025 0.15 13.1 1.7 3 23 194 214 193 215 0.95
3 16 0.00032 0.02 15.9 0.2 1 23 220 242 220 242 0.95
4 16 0.00076 0.047 14.7 2.0 1 23 291 314 291 314 0.94
5 16 8.5e-05 0.0052 17.7 0.5 1 23 320 342 320 342 0.96
6 16 2 1.2e+02 4.0 0.3 1 23 376 399 376 399 0.88
7 16 0.0011 0.068 14.2 0.2 3 23 409 430 408 430 0.97
8 16 0.00014 0.0088 17.0 1.4 2 21 556 575 555 576 0.92
9 16 0.016 0.97 10.6 0.1 1 23 609 632 609 632 0.96
10 16 8.7e-05 0.0054 17.7 0.3 2 23 637 658 636 658 0.96
11 16 0.29 18 6.6 2.2 2 21 662 681 662 682 0.92
12 16 8.5e-06 0.00052 20.9 1.0 1 23 708 731 708 731 0.95
13 16 0.0012 0.077 14.1 0.4 1 23 737 759 737 759 0.92
14 16 0.24 15 6.9 0.1 1 23 765 787 765 787 0.96
15 16 0.14 8.9 7.6 1.8 1 23 793 816 793 816 0.94
16 16 0.0075 0.46 11.6 2.4 2 23 823 845 822 845 0.95

Sequence Information

Coding Sequence
ATGGTTGATATGCTTAATAAAACAAGAATTGTAGTGGTTGCCTTACATAGAAAACTTATCACAAGTACATCTAGAAAACAAATTTTAAGAACGATCGCGGAGGACTCGGGCCTGCCTCCAGGCCTCTGCAGACCGTGCTCAGAGGACGCCATAGCAGCCGCACACTTCCGCCAACTCGCCACCTTCTCTCACCAGCACTGGACGAAAGCTGTCGACTCCCTCACCCAAATACACGACCCGGAAGACGATCACAGGACTTACTACGTCTTCTATAACAACGGAGAGATGCTGATCCGAGAGGAATTCAGAAAAATCTCTATAGAAGAAGCCGTGCTAAGACTTAACGAAAAACCGGCGAAGGCCGCGAAGAACATGAGATTGAAGAGATCTTACAAATACACGAGATCCGTAGGGAAATGTCAATGTCCGGATTGTGGAAAAGATTTCACTGTAGCTTATAACTTGAATGTACATTTGAAGAATACTATGAAACGCGCGTGTGTTAGATGCGGATTGGTTATGGAGAGGGAAAAACTGGCTGACCATTTGGCTAAAGTACACTTATGTTTATATGCTGATTGTGATATCTGCTTCAAACTGTTTAGCGATGAAAAACTACTCCAGCAGCATTATATGTCGCACCATAACAGATACTCCTTCAATTGTCAGATCTGCGGTCGAGGCTACACTAGCGACAGAGCTCTAAGAGCTCACATGTACGCTCATACTCTATTCCACTGCTTTCCCTGTAACGTAAGCTTCGAAAATCGTCGTTGCTACAAACACCATCAGAAGAAATGCAAATCTGCGCGACCAGTCGCATCCAGCTTCACTTGCGATGATTATGCGCGAACACCGGTCGCAACCAGCTTCATTTGCGATCATTGCGGACACGTTTACAACAAAAAACCTTCGTTACGCATTCATATAATACAGAAACACCTACACGTGCTACCTTACGTATGTGAAACGTGTGGTAAAAGGACATCTACATTAGCACACTTGAGGTCTCACGAGGCTGTACATACTACGGAAAGGAAGCTTTATAAATGTGCTTGCGGTGCTGAAATGCGAACAGAGCTAGGATACCTTTTACACCAGAGAATACACACAGGTGAAAAGCCATACGAGTGTGAAGAGTGCGGCGATCGATTTTTATCAGCTTCAAGACGCTTGGACCATATTAAAAGAAGGCATAGGAGCACTAAAGACATGCCGCACGGCTGCGACATATGCCAGGCTAGGTTCATAAGGCCGTTTGAGCTGAAGAAACACTATTCATCGGTCCACGACTCTGTGGTGCAGGTTATGCCGGCGAAGAAAAGGCTTCGACGCCAGATAACAGAGGAATCCCTGTGCCCCAGCGGCGTATGCGCCGCCTGCACCGCCCACGCCATCGCAGCGCAAGAGTTCCGCACCCTCGTCGCCGACTCCCTCAAAATATGGTCCATCGCCGTCAAGCAACTCGAAATCATCCCTCTCAACCACACCCCCACCGTAAAATCCCTCTGCGCCTTCATCAGATCAGACAATCTAAACATACAAATAGCCAGAGACTACTCCATAAATGAAAAAACTACTCCCCTAAACAGACTTAAAACTAGAATGAATAGAAAGAAAAGTGATGAGCGAAAACCAAGAGTTCACCGCTCAGGGCCGCCATGTAAATGCACAGATTGTGGGAAGGAATTCATAAGTCCTTATTATTTAAACGTGCACTTTAAAAATAGCGGTCAGAAAGACGCTTGCATAACCTGTGGGACCATTGTTCTTAGAGGTAAACAGATGAGAGATCATTTAGTGAAAGTACATAGAGAAACAGCGTTCGTGTGTAAGGAGTGTCCTGCGATATTCAACAATGAAATTGAAGCTAAGAAACACGAGAAAAAAGCGCATAAAAGTGGATTAACGTGTGGTGATTGCGGACGAACGTTCCAAAGGAATGCGTCTTTCGAAACTCACGCGCAAATGCACGCTGTACGTACTTGTAGGACGTGCGGTGTACAGTTTACGAATAGAGCTTGCTACAGGGAACATAGATCTAAATGCGAGCCGGATGCGAAACCTGACAGAGACACCGTACCGAGAAACAGGCGATCAAACATTCGCGATCCAGCTCAATTTACCTGTGACTATTGCAAGAAAACCTACACATCCCGTCCACAATTGAAGAACCATATACTATGGATACATATGGATGTGCGTCCACACCAATGTCAATGGTGTGGAAAGCGTTTTTACACTCCAGCAAGGTTAGCAGAGCATAGTGTTGTACACACTAGGGAGCGGAACTTCGCCTGTGACATCTGCGGAGCGAAATTAGTATCCAAAATGGCCGCCGTGTACCACAGACGCCGTCATACTGGTGAAAAACCTTATCGCTGCGAAGACTGCGGTGATTGTTTTATTTCTGCCTCAAGGCGTTCGGAACACGCTAAAAGAAAGCACGGGAAAGGTCCAAGATTGCATTGTACTAGATGTCCTTCTAGCTTCGTTCGGATTCATGAATTACGGAGGCATATTGAGAAAGCACATAGTCACGTTCCTGTATACGAGTTTCCGAAAAAAGAAGTTTTAGAGAGCTAA
Protein Sequence
MVDMLNKTRIVVVALHRKLITSTSRKQILRTIAEDSGLPPGLCRPCSEDAIAAAHFRQLATFSHQHWTKAVDSLTQIHDPEDDHRTYYVFYNNGEMLIREEFRKISIEEAVLRLNEKPAKAAKNMRLKRSYKYTRSVGKCQCPDCGKDFTVAYNLNVHLKNTMKRACVRCGLVMEREKLADHLAKVHLCLYADCDICFKLFSDEKLLQQHYMSHHNRYSFNCQICGRGYTSDRALRAHMYAHTLFHCFPCNVSFENRRCYKHHQKKCKSARPVASSFTCDDYARTPVATSFICDHCGHVYNKKPSLRIHIIQKHLHVLPYVCETCGKRTSTLAHLRSHEAVHTTERKLYKCACGAEMRTELGYLLHQRIHTGEKPYECEECGDRFLSASRRLDHIKRRHRSTKDMPHGCDICQARFIRPFELKKHYSSVHDSVVQVMPAKKRLRRQITEESLCPSGVCAACTAHAIAAQEFRTLVADSLKIWSIAVKQLEIIPLNHTPTVKSLCAFIRSDNLNIQIARDYSINEKTTPLNRLKTRMNRKKSDERKPRVHRSGPPCKCTDCGKEFISPYYLNVHFKNSGQKDACITCGTIVLRGKQMRDHLVKVHRETAFVCKECPAIFNNEIEAKKHEKKAHKSGLTCGDCGRTFQRNASFETHAQMHAVRTCRTCGVQFTNRACYREHRSKCEPDAKPDRDTVPRNRRSNIRDPAQFTCDYCKKTYTSRPQLKNHILWIHMDVRPHQCQWCGKRFYTPARLAEHSVVHTRERNFACDICGAKLVSKMAAVYHRRRHTGEKPYRCEDCGDCFISASRRSEHAKRKHGKGPRLHCTRCPSSFVRIHELRRHIEKAHSHVPVYEFPKKEVLES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00660610;
90% Identity
-
80% Identity
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