Nudd047778.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- ZFY
- Assembly
- GCA_905163555.1
- Location
- LR991076.1:1844157-1847900[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0006 0.069 15.2 0.4 2 21 110 129 109 130 0.94 2 15 0.0033 0.37 12.9 1.1 3 23 163 183 162 184 0.95 3 15 0.0014 0.16 14.1 0.1 3 23 191 211 189 211 0.96 4 15 0.00023 0.026 16.6 1.4 1 23 247 270 247 270 0.95 5 15 9.1e-05 0.01 17.8 0.5 1 23 276 298 276 298 0.96 6 15 2 2.3e+02 4.2 0.3 1 23 332 355 332 355 0.88 7 15 0.00016 0.019 17.0 1.3 2 21 482 501 481 502 0.92 8 15 0.066 7.6 8.8 0.1 1 23 535 558 535 558 0.93 9 15 5.8e-05 0.0066 18.4 0.2 2 23 563 584 562 584 0.96 10 15 0.86 98 5.3 1.8 2 21 588 607 588 608 0.91 11 15 1.2e-05 0.0014 20.5 0.8 1 23 634 657 634 657 0.95 12 15 0.0013 0.14 14.2 0.4 1 23 663 685 663 685 0.92 13 15 1.1 1.3e+02 4.9 0.1 3 23 693 713 691 713 0.97 14 15 0.15 17 7.7 1.8 1 23 719 742 719 742 0.94 15 15 0.0012 0.14 14.3 1.1 2 23 749 771 748 771 0.95
Sequence Information
- Coding Sequence
- ATGGTTTCGGAAGAGATCACGGTCGCCGACGACGCTGGTTTTCCTCAAGGCCTCTGCAGGGCTTGCTCAGAAGACACCATAGCCGCAGCGCACTTCAGACAACTCACAACCATCTCCCACCATCACTGGAACAGTGCCGTCGACTCTCTCTCCTTCATACACGACCCAGAAGACGATAACAGGACCTACTACGTCTTCTACAGCAACGGagaaatttatataaatgagGAGCACAGAAAATCGATGGATAAAAAAGAAGTCGTTGTTCAGCTTAATGAAAAGAGGACTAAACCTAAAAGATCTTACACGAAATCATCAGGGAAGTGCCAGTGTCCTGACTGCTTTAAAGATTTCCCTGTTGCTTATAATCTGAACGTCCATTTGAAGAATACGATGAAGCGAGCGTGTATTAGATGCGGGATCGTTTTGGAAAGGGAGAAATTGGCGGATCATTTAGCGAAAGTTCACGGGAAACTGTACGCCGATTGCGATATTTGCTTCAAACTGTTCGAGGACGAGGATATGCTCAAACAGCATTACCTGACGCATCACAGCAGATTCTCCTTCGGCTGTCAGATATGCGGACGGGGTTACACGAACGACAGAGCTCTTAGAGCACACATGTACGCTCATACATTATTCCATTGCTTATCATGCAACTCTAGCTTCGAGAACCGACGCTGCTATAAGCATCATCAGAAGAAATGCAAGTCGGCCAAAGCGCCAGTCGCGACCACGTTCACTTGCGATTATTGTGGACACGTGTACAACAAGAAACCTTCGCTCCGTATCCATATAATACAGAAACACATGAACATACTCCCGTACGTGTGCGAAACTTGTGGCAAGAGGACCTCAACGCTAGCGCACTTGAGATCGCACGAAGCGATACACACTACAGAAAGGAAGCTATATAAATGTACTTGCGGCGCGGAGATGCGAACGGAGCTAGGGTTCCAATTACATCTAAGAATACATACAGGAGAAAAGCCGTACGAATGTGAAGAATGCGGTGACCGCTTCTTATCCGCTTCTAGAAGGCTGGACCACATTAAAAGACGGCATAGGAGCACTAAAGACATGCCACATGGCTGTGATCTGTGCCAAGCGCGGTTCATAATAGACGAGTCACTCTGCCCCAGCGGCGTCTGTGCAACGTGCACCGCACACGCCATCGCCGCTCAAGAGTTCCGCAGCCTAGTGGCAGACTCCATCAAAATATGGTCCTTCGCTATCAAGCAACTAGAGATCATACCCCTCAACAACGCTCCCTCCGTCAAATCGCTATGCGCCTTCTTAAGATCTGACAACCTCAACATCCAGATCGCTAAAGACTATTCCGTCAACGACAAAACGACTCCATTAACGAGGTTAAAGACGCGGATGAACAAGAAAAAGAGCGACGAGAGGAAACCTAGAGTACACAGAACGGGCCCGCCCTGCAAATGCACGGACTGCGGCAAGGAATTCATAAGCCCTTACTACCTGAATATACACTTCAAGAACAGCGGTCAGAAAGACTCTTGCATCACATGCGGTGCCGTTCTACCACGAGGCAAACAGATGAGGGATCATCTAGAGAAAGTGCACAGAGAAACCGCTTTCCTCTGCAAAGAATGCCCTGCGATTTTCAACAGTGAGGCAGACGCGAAGAAACATGAGAAGAATGCGCATAAGACTGGGCTCACTTGTGCGGATTGTGGGCGCACGTTTATAAGGAGCGGCTCGTTCGAGGCTCATTCGCAAATGCACGCTGTCCGCACGTGTAGAGCTTGCGGCATGCAGTTCACCAATAGGGCGTGCTACAGGGAGCATAGATCCAAGTGCGAGCCAGACGCGAAACCTGACAGAGACACTATACCTCGTAACAGACGATCTAACATCCGCGACCCAGCCACATTTACTTGCGACTACTGTACGAAGACTTACACATCCCGTCCTCAATTGAAGAACCATATTCTTTGGATACATATGGACGTTCGTCCACACCAATGTCAGTGGTGCGGCAAGCGCTTCTACACACCAGCCCGCTTAGCGGAACATAGCGTCGTACATACACGGGAGCGGAATTTCGGCTGCGATATATGCGGGGCGAAACTGGTTTCCAAAATGGCCGCCGTGTATCATAGACGACGTCATACTGGCGAAAAGCCGTATCGCTGCGAAGACTGTGGGGACTGCTTCATTTCTGCATCAAGACGGTCGGAACATGCGAAGCGGAAGCACGGGAAAGGCCCAAGGCTCCAGTGCACTAGGTGTCCATCAACTTTCGTTCGGATACATGAGCTGAAGAGGCATATTGAGAAAGCGCATAGTCATGTTGTTCCTATATTTGCTGTTGAAGAGTCCTGCTAA
- Protein Sequence
- MVSEEITVADDAGFPQGLCRACSEDTIAAAHFRQLTTISHHHWNSAVDSLSFIHDPEDDNRTYYVFYSNGEIYINEEHRKSMDKKEVVVQLNEKRTKPKRSYTKSSGKCQCPDCFKDFPVAYNLNVHLKNTMKRACIRCGIVLEREKLADHLAKVHGKLYADCDICFKLFEDEDMLKQHYLTHHSRFSFGCQICGRGYTNDRALRAHMYAHTLFHCLSCNSSFENRRCYKHHQKKCKSAKAPVATTFTCDYCGHVYNKKPSLRIHIIQKHMNILPYVCETCGKRTSTLAHLRSHEAIHTTERKLYKCTCGAEMRTELGFQLHLRIHTGEKPYECEECGDRFLSASRRLDHIKRRHRSTKDMPHGCDLCQARFIIDESLCPSGVCATCTAHAIAAQEFRSLVADSIKIWSFAIKQLEIIPLNNAPSVKSLCAFLRSDNLNIQIAKDYSVNDKTTPLTRLKTRMNKKKSDERKPRVHRTGPPCKCTDCGKEFISPYYLNIHFKNSGQKDSCITCGAVLPRGKQMRDHLEKVHRETAFLCKECPAIFNSEADAKKHEKNAHKTGLTCADCGRTFIRSGSFEAHSQMHAVRTCRACGMQFTNRACYREHRSKCEPDAKPDRDTIPRNRRSNIRDPATFTCDYCTKTYTSRPQLKNHILWIHMDVRPHQCQWCGKRFYTPARLAEHSVVHTRERNFGCDICGAKLVSKMAAVYHRRRHTGEKPYRCEDCGDCFISASRRSEHAKRKHGKGPRLQCTRCPSTFVRIHELKRHIEKAHSHVVPIFAVEESC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00660610;
- 90% Identity
- iTF_00660610;
- 80% Identity
- -