Edem025243.2
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000457.1:35486-43556[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.6 1.1e+04 -2.0 0.0 26 41 53 68 46 73 0.74 2 9 0.0011 8.2 8.1 0.0 20 45 157 182 145 185 0.88 3 9 2.5 1.9e+04 -2.6 0.0 22 31 215 224 211 238 0.78 4 9 0.0014 10 7.8 0.0 20 46 270 296 255 301 0.85 5 9 0.66 4.9e+03 -0.8 0.0 26 47 388 409 383 416 0.83 6 9 0.00034 2.5 9.8 0.1 21 48 439 466 433 471 0.86 7 9 0.14 1e+03 1.4 0.6 23 45 469 491 465 500 0.80 8 9 1.3 9.8e+03 -1.7 0.4 18 30 492 504 487 511 0.78 9 9 5.7e-05 0.42 12.2 0.6 20 52 522 554 513 555 0.87
Sequence Information
- Coding Sequence
- ATGGACGCACTGCATTCGTGCCGCTGCTGCCTACTGCGCCCTCCGGACAAGGGCCTCGACATGCTGTACACACATCTCGGCAAACCGGAGATATATTCAGATATGCTGAGAGAATGCTTCGATATACATgTAAGTTCAGGAAATGATGTGTGCGGTATCTGCGAGGTGTGTGTGGGCCGGCTGCGGGACGCGAGCAACTTCAAACATCAAGTGCAGCACAGCCAGATGGAGCTGCAGCGGCTGCAGGGAGCACCGAGTGGCACAGGTGAAGTAAAGATAGAGAGACAAGAATTCGACGTTGACATATCCCCAATTGGTGACGAGGAGACTCCACTGGCGTTCTTCGCGTCGACGcagcccgcccccgcccccgccccgcccgCAGCCCGCGGCGTCGTCCACATCTGCGACATATGCCAGAAGTCCTTCGACCACCACTCGGCGCTCGTCACTCACCGCCGCATCCACACAGGAGAGAAACCTTACACCTGCAATGTATGCCACAAACAATTCGCTCAAAAAGGCAACTTAAACGCTCATTTCAAATATCACATGGGGGATTATCGATTCTACTGCGAAATATGCAATAAAGGGTATACCCAAAAATCTACCCTACTCAAACATGCGGTGTCACACACTGGAGAAAAATCTCACACTTGCGAAGTATGCAATAAACAGTTTGCACTAAAAGGTTACTTGACTTCTCATTTAAAAACTCATTGGAAATCTGAACAAAATCGACACACAGAAAGAAAAGGTTGCGAAAAAAAGGGCGCACACGACGTCAATACTAATTCAAAAGATCGGGCAAGTGACAAACCATACGAAtgtgaaatatgtaaaaaacGGTTTGCACAGAAAAGCAACTTAAATTCTCATTTAAAGTATCATACAGCCCGGTTCTCTTGCAATCTGTGTGATCAAAAATTCACAGTGAAGTCTCGCTTAGATGCCCACATACTTCGTCACAAGAGGGGACAGATTTATGCTTGTGGAATATGCAATAAGCACTTTAAATCAAAAAGTGTGTTGACCCATCATTCGAAAATTCACCCAGGTGACTATCGATTTACTTGTGATGTATGTAACCAAAAATTTGAACTGAAAGAGATCATGCTACAACATATGCAAGTACACACGGAACCAAAGCAACATAATTTCTGCTGTGAAATATGTGGAAAAcagtttttgcaaaaaaattcTTTATCCAAACACATGGATGTACATATGGGAATAAGGCCATTCATTTGTGAAGTATGCAATAAAAGTTTCACACACAAAAACATCTTGAATTCCCATAAATTAACACACACTAATGAAAAGCCCTATGCTTGCGAAGTGTGTGATAAGCGATTCCGGCAGAGCAACGCTTTACAAGGCCACTTGTTGATTCACGAAGGTCTTAAACCACACACCTGCGAAGTATGTAAAAAGGAATTCAGACATAAATCTGCGTTGACAGTTCATATGCGACGACACACAGGACAAAAACCACATTGTTGTGACATATGTAAAAAGGAATATATAGTTTTAGCTGAATTAAAAATGCATTACCGCAGTCATACTGGGGAAAAACCATATGCTTGTCATATTTGTGACGCCAAATTTGCACGACCTGATCATTTCAGGAGACATCTTAAACGCGTTCACAACGAGAAGCCTCCGAAATCTGAAAAATCTCTTGTAATGTGA
- Protein Sequence
- MDALHSCRCCLLRPPDKGLDMLYTHLGKPEIYSDMLRECFDIHVSSGNDVCGICEVCVGRLRDASNFKHQVQHSQMELQRLQGAPSGTGEVKIERQEFDVDISPIGDEETPLAFFASTQPAPAPAPPAARGVVHICDICQKSFDHHSALVTHRRIHTGEKPYTCNVCHKQFAQKGNLNAHFKYHMGDYRFYCEICNKGYTQKSTLLKHAVSHTGEKSHTCEVCNKQFALKGYLTSHLKTHWKSEQNRHTERKGCEKKGAHDVNTNSKDRASDKPYECEICKKRFAQKSNLNSHLKYHTARFSCNLCDQKFTVKSRLDAHILRHKRGQIYACGICNKHFKSKSVLTHHSKIHPGDYRFTCDVCNQKFELKEIMLQHMQVHTEPKQHNFCCEICGKQFLQKNSLSKHMDVHMGIRPFICEVCNKSFTHKNILNSHKLTHTNEKPYACEVCDKRFRQSNALQGHLLIHEGLKPHTCEVCKKEFRHKSALTVHMRRHTGQKPHCCDICKKEYIVLAELKMHYRSHTGEKPYACHICDAKFARPDHFRRHLKRVHNEKPPKSEKSLVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658663; iTF_00657478;
- 90% Identity
- iTF_00658663;
- 80% Identity
- iTF_00658663;