Edem013460.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000215.1:80738-87250[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.042 3.1e+02 3.1 0.0 19 52 78 111 73 112 0.84 2 10 0.2 1.5e+03 0.9 0.1 22 43 109 130 106 134 0.89 3 10 2.9e-05 0.21 13.2 0.2 18 43 132 158 126 167 0.85 4 10 0.034 2.5e+02 3.4 0.0 21 44 164 187 161 197 0.86 5 10 0.55 4.1e+03 -0.5 0.1 21 42 192 213 181 219 0.71 6 10 0.0022 16 7.2 0.1 18 47 216 246 210 251 0.80 7 10 0.014 1e+02 4.6 0.1 21 46 248 273 244 280 0.84 8 10 0.26 1.9e+03 0.5 0.1 21 44 276 299 271 307 0.85 9 10 0.00029 2.1 10.0 0.1 21 46 332 357 324 365 0.84 10 10 0.13 9.6e+02 1.5 0.0 23 43 362 382 355 386 0.79
Sequence Information
- Coding Sequence
- ATGTCTACGAACGCCGGTGAAAATAGCGACATGGAGACAGAGTGGTTGGAAGATGAGGACGATGTAGATGTCAAGTTGGAATCAGAGTCGGAAGAAAATGTGCAGGAGGAGACCGAGGGCGAGAGCAAGAACGCAGGCTCGTGCGAGAGCGAGACGGAGCAGCAGGAGCGACATTCGGACACACGCTGTTGGCCTACTCTCACCATCGGGTCGATAGGAGCCGGGACACGAGGCGCGCACACCGACCCCACCTCTTGCGCAGTCTGCGGCAAAAAGTTCAAGAAAGCGAGCGTGCTGAAGGTCCACATGCGACTCCACACGGGAGAGAAACCGTTCCCCTGCAACATGTGCGAGAAACGATTCAACCAACTGATCCATTTGAAGAGACACGAGCAAGCTCACAGCGAACAAAAAGCTTTCACGTGCCCGATATGCGAAAAACAGTTCTCGCAGCCGAGTGACTTGAAGAGACATGGAATAATTCACACGGGAGAGAAACCGTATAAGTGTGATATCTGTCATAAAGGATTTACACAAGTGGGCTCATTGAAGACGCATGCACGCGTCCATACTGGAGAAAGACCTTACGCCTGCGAAATGTGTCCGAAGCGATTCGCGCAACAGCACCAGATGAAGGTACACGAACGTAGTCATACTGGAGAAAAACCATACAGTTGTGAAATCTGTGACAAGCGGTTTACGAAAGCGGTCGACTTGCAGAGACACGTGCGTGTGCACACTGGGGAGAAACCGTTTTCCTGTGCCATATGCGAGAAGAAGTTTTCAGATGTTTTGTATTTAAGACGACATGAACGAGTTCACACTGGGGAAAAGCCATACGCGTGCGAAACGTGTAAAAGAGAGTTTACAGAATGGGGCAGTTTGAGAAGACACGAGCGGATTCATACTGGAGACCGTCCTTACCCCTGCCAAACATGCGGAAAGCGTTTCAAAATTCTGCACTCTTTAAAAATGCACAACCGAATACACACTGGCGAGAAACCCCATTCCTGCCCTATTTGTGAGAAGAAGTTCATTGACTCGAACAGCATGAGGAAGCACGAGCGGATACACACAGGCCTAAAACCTTTCACATGTGATATTTGTTTAAAGGACTTTACTGAAATGGGTAGTTTGAAGAAACATTCTCGACTTCACACGTGA
- Protein Sequence
- MSTNAGENSDMETEWLEDEDDVDVKLESESEENVQEETEGESKNAGSCESETEQQERHSDTRCWPTLTIGSIGAGTRGAHTDPTSCAVCGKKFKKASVLKVHMRLHTGEKPFPCNMCEKRFNQLIHLKRHEQAHSEQKAFTCPICEKQFSQPSDLKRHGIIHTGEKPYKCDICHKGFTQVGSLKTHARVHTGERPYACEMCPKRFAQQHQMKVHERSHTGEKPYSCEICDKRFTKAVDLQRHVRVHTGEKPFSCAICEKKFSDVLYLRRHERVHTGEKPYACETCKREFTEWGSLRRHERIHTGDRPYPCQTCGKRFKILHSLKMHNRIHTGEKPHSCPICEKKFIDSNSMRKHERIHTGLKPFTCDICLKDFTEMGSLKKHSRLHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658662;
- 90% Identity
- iTF_00658015;
- 80% Identity
- iTF_00658662;