Edem041412.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000983.1:159164-170886[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0006 4.5 9.0 0.7 20 47 195 222 185 229 0.80 2 12 0.79 5.8e+03 -1.0 0.0 21 43 224 246 220 251 0.79 3 12 0.00034 2.5 9.7 0.1 21 44 252 275 244 280 0.90 4 12 0.19 1.4e+03 0.9 0.1 21 36 338 353 331 364 0.75 5 12 0.0003 2.2 9.9 0.0 21 46 366 391 359 397 0.91 6 12 0.081 6e+02 2.2 0.2 25 46 398 419 393 426 0.75 7 12 0.3 2.2e+03 0.3 0.1 21 43 422 444 418 449 0.79 8 12 0.017 1.2e+02 4.3 0.0 21 43 450 472 439 478 0.88 9 12 0.0003 2.2 9.9 0.0 21 46 501 526 495 533 0.91 10 12 0.081 6e+02 2.2 0.2 25 46 533 554 528 561 0.75 11 12 0.32 2.3e+03 0.3 0.2 21 43 557 579 551 583 0.79 12 12 0.017 1.2e+02 4.3 0.0 21 43 585 607 574 613 0.88
Sequence Information
- Coding Sequence
- ATGCTTCTCACTTATATACTTAAAGACCAATCCCTGAATAAAGTTAGTTTTATGAAGGATTTAGATGTCTATGCTTTGCTTGAACCAGGTACTGTACAAGTGAAGCTGGAGCCCTGGTGCGCGGCGGAGCCCGACCACGTGGCACAGGAGCCCGagtgcgcggcgccggcgcgggcggctGCCGTCGAGCAGGAGTCGTGTGCGCTGCTGGAGCCCGACGTCCACCAACAGGAAGTACCTGTGAAGCGGGAACCCCTGCCCCTGTGCGAGCCCCCGCCGGCCCCGGGGGAGCGCgaggcgggggcgggggccgGGGGgcgcgcgggggcgggggcagACTTTTGGTACGAGGTCGCGCTAGAGCCCGAGTGTGTGTTGCAGCCGGGTGGGGCGCTTCATGATTCACCTCACTTTCGCCGGCCCGGCCCGCTCGCCCGCGCGCCCGCCGGGCCCGCACACACTTTCGTGTGCGACGCTTGCGGGGAATCGTTCATACAAAAACATCAATTAGTTTGCCACATAAACACCTGTCTACAAGAAAAACCCGTGatcatacagaaaaagttaaaaTCGATCAGTCATACGAGCAAAAAGCCCCACGCCTGCCAAGTGTGTCAAAAAGCGTTCTCGATCAAGCGCGACTTGAGGAGACATGAGCGGATTCACACTGGAGAAAAGCCCTTCTCCTGCGAAGTATGTAAAAAGAACTTCACACAACTGGGCGCTCTGACACAACACAAACGAATACACACTGGTGAGAAACCGCACACCTGCGAGGTGTGCCATAAAGAGTTTGCCCAGTCGGGCAGCTTGAACAGACACAAGCAGACGCACGTGGACGCGGGCGCGTCCACCTATTCCTGTGAGTTATGTAACATGGAGTTTGCACATAAGAATCATTTGAAGATACACATACGGAACCATACCGGCGCGAAATTATACTCCTGCGAAATGTGTACAAAGGAGTTTGCGGTCCTGCACGACTTGCTCAGACATCAGCGGACTCACACTGGAGAGAAACCCTTCTCGTGTGATATCTGTCACAAGGAGTTCACGCAGCTGGCCCACGTCAACAATCACAAGCGGATACACACCGGAGAGAAACCTTACACCTGCGAACTGTGCAACAAAGGCTTCACCAATATAAGCAACTTGAAGCGACATCTCGACGTGCACGCGGGTACGAGGTCCTTCACCTGCGAGATATGTTATAAAGCGTTTACACTCAAAACTCATTTAATGGCGCACATACGGATTCACACGGGCGAAAAGCCTTACTCCTGCGAGATATGCAAAAAGGAGTTTTCGCGGTCTGGTTATTTAAAAATACACCAGCGAGTACACACTGGAGAAAAGCCACACGCCTGTGAAGTATGCAAAGGACAGTTTGCGTCGCTGCGCAATCTAAAGGAGCACAAGTTAATACATACTGggttccgtagtcgactaggaacccttagaCAGCTGGCCCACGTCAACAATCACAAGCGGATACACACCGGAGAGAAACCTTACACCTGCGAACTGTGCAACAAAGGCTTCACCAATATAAGCAACTTGAAGCGACATCTCGACGTGCACGCGGGTACGAGGTCCTTCACCTGCGAGATATGTTATAAAGCGTTTACACTCAAAACTCATTTAATGGCGCACATACGGATTCACACGGGCGAAAAGCCTTACTCCTGCGAGATATGCAAAAAGGAGTTTTCGCGGTCTGGTTATTTAAAAATACACCAGCGAGTACACACTGGAGAAAAGCCACACGCCTGTGAAGTATGCAAAGGACAGTTTGCGTCGCTGCGCAATCTAAAGGAGCACAAGTTAATACATACTGggttaaaGATGCCATGGAATGATGATTGCGCCGCGCAATGCCATGAAACCGTACCCGCACccgcgcccgtgcccgcgcccgtgcccgcgcccgTGCCCGTGCCCGTGCCCGGCGTACTCCCCTAG
- Protein Sequence
- MLLTYILKDQSLNKVSFMKDLDVYALLEPGTVQVKLEPWCAAEPDHVAQEPECAAPARAAAVEQESCALLEPDVHQQEVPVKREPLPLCEPPPAPGEREAGAGAGGRAGAGADFWYEVALEPECVLQPGGALHDSPHFRRPGPLARAPAGPAHTFVCDACGESFIQKHQLVCHINTCLQEKPVIIQKKLKSISHTSKKPHACQVCQKAFSIKRDLRRHERIHTGEKPFSCEVCKKNFTQLGALTQHKRIHTGEKPHTCEVCHKEFAQSGSLNRHKQTHVDAGASTYSCELCNMEFAHKNHLKIHIRNHTGAKLYSCEMCTKEFAVLHDLLRHQRTHTGEKPFSCDICHKEFTQLAHVNNHKRIHTGEKPYTCELCNKGFTNISNLKRHLDVHAGTRSFTCEICYKAFTLKTHLMAHIRIHTGEKPYSCEICKKEFSRSGYLKIHQRVHTGEKPHACEVCKGQFASLRNLKEHKLIHTGFRSRLGTLRQLAHVNNHKRIHTGEKPYTCELCNKGFTNISNLKRHLDVHAGTRSFTCEICYKAFTLKTHLMAHIRIHTGEKPYSCEICKKEFSRSGYLKIHQRVHTGEKPHACEVCKGQFASLRNLKEHKLIHTGLKMPWNDDCAAQCHETVPAPAPVPAPVPAPVPVPVPGVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658650;
- 90% Identity
- iTF_00658650;
- 80% Identity
- iTF_00658650;