Edem041412.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000983.1:159164-170886[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.011 1.1 11.3 0.6 1 22 155 176 155 176 0.92 2 15 8.9e-05 0.0087 17.9 1.5 1 23 200 222 200 222 0.96 3 15 1.2e-05 0.0012 20.6 0.9 1 23 228 250 228 250 0.98 4 15 2e-05 0.002 19.9 4.0 1 23 256 278 256 278 0.98 5 15 5.9e-05 0.0058 18.5 3.5 1 23 286 308 286 308 0.98 6 15 1.9e-05 0.0019 20.0 1.6 1 23 314 336 314 336 0.99 7 15 0.00012 0.011 17.6 3.7 1 23 342 364 342 364 0.98 8 15 1e-06 0.0001 24.0 0.6 1 23 370 392 370 392 0.98 9 15 4.4e-06 0.00043 22.0 1.4 1 23 398 420 398 420 0.98 10 15 3.4e-07 3.3e-05 25.5 0.9 1 23 426 448 426 448 0.98 11 15 0.018 1.7 10.7 0.7 1 23 454 476 454 476 0.95 12 15 1e-06 0.0001 24.0 0.6 1 23 505 527 505 527 0.98 13 15 4.4e-06 0.00043 22.0 1.4 1 23 533 555 533 555 0.98 14 15 3.4e-07 3.3e-05 25.5 0.9 1 23 561 583 561 583 0.98 15 15 0.018 1.7 10.7 0.7 1 23 589 611 589 611 0.95
Sequence Information
- Coding Sequence
- ATGCTTCTCACTTATATACTTAAAGACCAATCCCTGAATAAAGTTAGTTTTATGAAGGATTTAGATGTCTATGCTTTGCTTGAACCAGGTACTGTACAAGTGAAGCTGGAGCCCTGGTGCGCGGCGGAGCCCGACCACGTGGCACAGGAGCCCGagtgcgcggcgccggcgcgggcggctGCCGTCGAGCAGGAGTCGTGTGCGCTGCTGGAGCCCGACGTCCACCAACAGGAAGTACCTGTGAAGCGGGAACCCCTGCCCCTGTGCGAGCCCCCGCCGGCCCCGGGGGAGCGCgaggcgggggcgggggccgGGGGgcgcgcgggggcgggggcagACTTTTGGTACGAGGTCGCGCTAGAGCCCGAGTGTGTGTTGCAGCCGGGTGGGGCGCTTCATGATTCACCTCACTTTCGCCGGCCCGGCCCGCTCGCCCGCGCGCCCGCCGGGCCCGCACACACTTTCGTGTGCGACGCTTGCGGGGAATCGTTCATACAAAAACATCAATTAGTTTGCCACATAAACACCTGTCTACAAGAAAAACCCGTGatcatacagaaaaagttaaaaTCGATCAGTCATACGAGCAAAAAGCCCCACGCCTGCCAAGTGTGTCAAAAAGCGTTCTCGATCAAGCGCGACTTGAGGAGACATGAGCGGATTCACACTGGAGAAAAGCCCTTCTCCTGCGAAGTATGTAAAAAGAACTTCACACAACTGGGCGCTCTGACACAACACAAACGAATACACACTGGTGAGAAACCGCACACCTGCGAGGTGTGCCATAAAGAGTTTGCCCAGTCGGGCAGCTTGAACAGACACAAGCAGACGCACGTGGACGCGGGCGCGTCCACCTATTCCTGTGAGTTATGTAACATGGAGTTTGCACATAAGAATCATTTGAAGATACACATACGGAACCATACCGGCGCGAAATTATACTCCTGCGAAATGTGTACAAAGGAGTTTGCGGTCCTGCACGACTTGCTCAGACATCAGCGGACTCACACTGGAGAGAAACCCTTCTCGTGTGATATCTGTCACAAGGAGTTCACGCAGCTGGCCCACGTCAACAATCACAAGCGGATACACACCGGAGAGAAACCTTACACCTGCGAACTGTGCAACAAAGGCTTCACCAATATAAGCAACTTGAAGCGACATCTCGACGTGCACGCGGGTACGAGGTCCTTCACCTGCGAGATATGTTATAAAGCGTTTACACTCAAAACTCATTTAATGGCGCACATACGGATTCACACGGGCGAAAAGCCTTACTCCTGCGAGATATGCAAAAAGGAGTTTTCGCGGTCTGGTTATTTAAAAATACACCAGCGAGTACACACTGGAGAAAAGCCACACGCCTGTGAAGTATGCAAAGGACAGTTTGCGTCGCTGCGCAATCTAAAGGAGCACAAGTTAATACATACTGggttccgtagtcgactaggaacccttagaCAGCTGGCCCACGTCAACAATCACAAGCGGATACACACCGGAGAGAAACCTTACACCTGCGAACTGTGCAACAAAGGCTTCACCAATATAAGCAACTTGAAGCGACATCTCGACGTGCACGCGGGTACGAGGTCCTTCACCTGCGAGATATGTTATAAAGCGTTTACACTCAAAACTCATTTAATGGCGCACATACGGATTCACACGGGCGAAAAGCCTTACTCCTGCGAGATATGCAAAAAGGAGTTTTCGCGGTCTGGTTATTTAAAAATACACCAGCGAGTACACACTGGAGAAAAGCCACACGCCTGTGAAGTATGCAAAGGACAGTTTGCGTCGCTGCGCAATCTAAAGGAGCACAAGTTAATACATACTGggttaaaGATGCCATGGAATGATGATTGCGCCGCGCAATGCCATGAAACCGTACCCGCACccgcgcccgtgcccgcgcccgtgcccgcgcccgTGCCCGTGCCCGTGCCCGGCGTACTCCCCTAG
- Protein Sequence
- MLLTYILKDQSLNKVSFMKDLDVYALLEPGTVQVKLEPWCAAEPDHVAQEPECAAPARAAAVEQESCALLEPDVHQQEVPVKREPLPLCEPPPAPGEREAGAGAGGRAGAGADFWYEVALEPECVLQPGGALHDSPHFRRPGPLARAPAGPAHTFVCDACGESFIQKHQLVCHINTCLQEKPVIIQKKLKSISHTSKKPHACQVCQKAFSIKRDLRRHERIHTGEKPFSCEVCKKNFTQLGALTQHKRIHTGEKPHTCEVCHKEFAQSGSLNRHKQTHVDAGASTYSCELCNMEFAHKNHLKIHIRNHTGAKLYSCEMCTKEFAVLHDLLRHQRTHTGEKPFSCDICHKEFTQLAHVNNHKRIHTGEKPYTCELCNKGFTNISNLKRHLDVHAGTRSFTCEICYKAFTLKTHLMAHIRIHTGEKPYSCEICKKEFSRSGYLKIHQRVHTGEKPHACEVCKGQFASLRNLKEHKLIHTGFRSRLGTLRQLAHVNNHKRIHTGEKPYTCELCNKGFTNISNLKRHLDVHAGTRSFTCEICYKAFTLKTHLMAHIRIHTGEKPYSCEICKKEFSRSGYLKIHQRVHTGEKPHACEVCKGQFASLRNLKEHKLIHTGLKMPWNDDCAAQCHETVPAPAPVPAPVPAPVPVPVPGVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00659130;
- 90% Identity
- iTF_00659130;
- 80% Identity
- iTF_00659130;