Edem044123.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010001157.1:111175-117445[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.6 1.2e+04 -2.0 0.1 22 47 177 201 172 204 0.81 2 18 0.011 80 4.9 0.1 21 44 232 255 224 261 0.90 3 18 0.0045 34 6.2 0.1 21 44 276 299 269 305 0.89 4 18 0.0045 34 6.2 0.1 21 44 320 343 313 349 0.89 5 18 0.0045 34 6.2 0.1 21 44 364 387 357 393 0.89 6 18 0.0045 34 6.2 0.1 21 44 408 431 401 437 0.89 7 18 0.0045 34 6.2 0.1 21 44 452 475 445 481 0.89 8 18 0.0045 34 6.2 0.1 21 44 496 519 489 525 0.89 9 18 0.0045 34 6.2 0.1 21 44 540 563 533 569 0.89 10 18 0.0045 34 6.2 0.1 21 44 584 607 577 613 0.89 11 18 0.0045 34 6.2 0.1 21 44 628 651 621 657 0.89 12 18 0.0045 34 6.2 0.1 21 44 672 695 665 701 0.89 13 18 0.0045 34 6.2 0.1 21 44 716 739 709 745 0.89 14 18 0.0045 34 6.2 0.1 21 44 760 783 753 789 0.89 15 18 0.0045 34 6.2 0.1 21 44 804 827 797 833 0.89 16 18 0.0045 34 6.2 0.1 21 44 848 871 841 877 0.89 17 18 0.0045 34 6.2 0.1 21 44 892 915 885 921 0.89 18 18 0.0044 32 6.2 0.0 21 44 936 959 929 965 0.88
Sequence Information
- Coding Sequence
- ATGGAATCGCAAGTTTGCGTCCATTGTCTGAACAAGAAGATCATAAACTCGACAACCAACCGCCTGGTGACTGAAAGATGTGGCCATGTGAAGTGTATGGAGTGTTTGTTGCACGAGAAGGCGGGTTGCGTCGCTTGTGTGGAGAAGGCTACTTGTAAGGAGCCCGATGATACCCCGGACCCGAGCGAGGGGCCACCGTCGGATGGCGACAACATTGAGCCGGAGCCGGTGCACACAGACTTCCCTCTCAAACACTTCCTCCTGGGAGAGTGCCAGGAGAAGGATCAGCAGACTGAGTACTTTTGTGATAAGAAGAAGAAGCTGGAGACATCTCACATTAGGATAGAAACAGATGGGACTCGGCGGTATTACTTCTGCACAGCATGCAAGAGGAAGTTCCAAGCACGCAGCCAGGTCTCGTACCATGCTTACTGCAATGGACAGCAAAAGCCCTACCAGTGCCCTGAGTGCAATAAGAGTTTCGCTTCGCACTCCCACTTCAAGTACCACATGCGCGTGCACCGCGGCGAGCGCGCGTACGCCTGCGAGCTGTGCGGGGACAGCTTCTTCCAGATGTCCAAGCTGCAGCGGCACAAGCTCAAGCACACGAAGGAGAAGAAGTACCCGTGTGCAGAGTGCAGCAAAGCGTTCAACAACCTGACGTCTCTCCGCAAACACGCGCTCACGCACTCAGACGAGCGGCCGTATGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGAGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCATGTGGCCAAACTTTTTGCTGATGATATCTCACTAGTCTCACTACTCGATAACATGCCAAAGCGATAG
- Protein Sequence
- MESQVCVHCLNKKIINSTTNRLVTERCGHVKCMECLLHEKAGCVACVEKATCKEPDDTPDPSEGPPSDGDNIEPEPVHTDFPLKHFLLGECQEKDQQTEYFCDKKKKLETSHIRIETDGTRRYYFCTACKRKFQARSQVSYHAYCNGQQKPYQCPECNKSFASHSHFKYHMRVHRGERAYACELCGDSFFQMSKLQRHKLKHTKEKKYPCAECSKAFNNLTSLRKHALTHSDERPYGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKLFADDISLVSLLDNMPKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658636;
- 90% Identity
- iTF_00658636;
- 80% Identity
- iTF_00658636;