Edem044123.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010001157.1:111175-117445[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.5e-07 7.3e-05 24.5 5.4 1 23 152 174 152 174 0.99 2 20 0.0043 0.42 12.6 1.1 1 23 180 202 180 202 0.97 3 20 4.2e-05 0.0041 18.9 0.3 1 23 208 230 208 230 0.98 4 20 1.6e-05 0.0016 20.2 1.0 3 23 238 258 236 258 0.97 5 20 3.1e-05 0.003 19.4 1.5 3 23 282 302 282 302 0.98 6 20 3.1e-05 0.003 19.4 1.5 3 23 326 346 326 346 0.98 7 20 3.1e-05 0.003 19.4 1.5 3 23 370 390 370 390 0.98 8 20 3.1e-05 0.003 19.4 1.5 3 23 414 434 414 434 0.98 9 20 3.1e-05 0.003 19.4 1.5 3 23 458 478 458 478 0.98 10 20 3.1e-05 0.003 19.4 1.5 3 23 502 522 502 522 0.98 11 20 3.1e-05 0.003 19.4 1.5 3 23 546 566 546 566 0.98 12 20 3.1e-05 0.003 19.4 1.5 3 23 590 610 590 610 0.98 13 20 3.1e-05 0.003 19.4 1.5 3 23 634 654 634 654 0.98 14 20 3.1e-05 0.003 19.4 1.5 3 23 678 698 678 698 0.98 15 20 3.1e-05 0.003 19.4 1.5 3 23 722 742 722 742 0.98 16 20 3.1e-05 0.003 19.4 1.5 3 23 766 786 766 786 0.98 17 20 3.1e-05 0.003 19.4 1.5 3 23 810 830 810 830 0.98 18 20 3.1e-05 0.003 19.4 1.5 3 23 854 874 854 874 0.98 19 20 3.1e-05 0.003 19.4 1.5 3 23 898 918 898 918 0.98 20 20 0.00014 0.013 17.3 0.5 3 20 942 959 942 961 0.94
Sequence Information
- Coding Sequence
- ATGGAATCGCAAGTTTGCGTCCATTGTCTGAACAAGAAGATCATAAACTCGACAACCAACCGCCTGGTGACTGAAAGATGTGGCCATGTGAAGTGTATGGAGTGTTTGTTGCACGAGAAGGCGGGTTGCGTCGCTTGTGTGGAGAAGGCTACTTGTAAGGAGCCCGATGATACCCCGGACCCGAGCGAGGGGCCACCGTCGGATGGCGACAACATTGAGCCGGAGCCGGTGCACACAGACTTCCCTCTCAAACACTTCCTCCTGGGAGAGTGCCAGGAGAAGGATCAGCAGACTGAGTACTTTTGTGATAAGAAGAAGAAGCTGGAGACATCTCACATTAGGATAGAAACAGATGGGACTCGGCGGTATTACTTCTGCACAGCATGCAAGAGGAAGTTCCAAGCACGCAGCCAGGTCTCGTACCATGCTTACTGCAATGGACAGCAAAAGCCCTACCAGTGCCCTGAGTGCAATAAGAGTTTCGCTTCGCACTCCCACTTCAAGTACCACATGCGCGTGCACCGCGGCGAGCGCGCGTACGCCTGCGAGCTGTGCGGGGACAGCTTCTTCCAGATGTCCAAGCTGCAGCGGCACAAGCTCAAGCACACGAAGGAGAAGAAGTACCCGTGTGCAGAGTGCAGCAAAGCGTTCAACAACCTGACGTCTCTCCGCAAACACGCGCTCACGCACTCAGACGAGCGGCCGTATGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGAGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGAGCGACAACCTGACGTATCCTACACACACGCGCTCACGCGCTCAGACGAGCGGCCGAACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCATGTGGCCAAACTTTTTGCTGATGATATCTCACTAGTCTCACTACTCGATAACATGCCAAAGCGATAG
- Protein Sequence
- MESQVCVHCLNKKIINSTTNRLVTERCGHVKCMECLLHEKAGCVACVEKATCKEPDDTPDPSEGPPSDGDNIEPEPVHTDFPLKHFLLGECQEKDQQTEYFCDKKKKLETSHIRIETDGTRRYYFCTACKRKFQARSQVSYHAYCNGQQKPYQCPECNKSFASHSHFKYHMRVHRGERAYACELCGDSFFQMSKLQRHKLKHTKEKKYPCAECSKAFNNLTSLRKHALTHSDERPYGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKHNGERQPDVSYTHALTRSDERPNGCETCGRRFRDSSNYRKHVAKLFADDISLVSLLDNMPKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00659129;
- 90% Identity
- iTF_00659129;
- 80% Identity
- iTF_00659129;