Edem042771.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- lov
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010001059.1:42469-46273[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-18 2.4e-15 57.4 0.0 1 44 66 109 66 110 0.96
Sequence Information
- Coding Sequence
- ATGATTGAGATCGTAGTGTTCGGCATCGACTCGCCACTGGGCCTGTTCCCGCCCGGCATGGACAAGATGTACCCCCTGATGGACGTGGAAcaccgcgcgccgccgctcgacTCACAACTCTTTACTAACGTCAAAAAGAAATGGCGACCGAAAGGGCAGCACAGCGCGCCGCGCGGGGGGCCACCTCGGTCGTGGACCAACGCCGAGCTGACGGAGGCCCTACAACACGTGTGGAACAAGAAGATGACGACGAGTCAAGCTTCGAGAATCTTCGGCATCCCGTACAACTCGCTGCTCATGTACGTGCGAGGCAAGTACGGGAAGAGTCTGAAACTGGAGCAACTGCGTAAAGACTGCATCGGCGGGCCGTTGGACGCGCTCGGCATGCACTctggcaacaacaacaacaaccacCCACCCGGCAAGCACCACGACAAGGACGAGCACGGCGGCGGCCAGCGGCCCGCCAGCTCCGAGCCCGACATCGCCTCCAGCCCCATGTTCAACCCGTTCACGCAAGGTTTCTACCCGGAGTTCCCGCCCGGGTTCCCTATGCCGTTGAACATGCTGCACCTGCTGCCGCCTGGTGACAAGACACGCGAGCTGTACCAGGCGATGCCGATGGCGCTGGACTCGCTGGCCAACGTGGCTAAAGAGGAGGACTGCAAGAGCGACCGCTCCAAAGAGAATTCTGCGGATGAGGAAGGCGACGCGTACcgcgcgccgcacgcgcacgcgccgcagCCGCCCGACTCGCGCGCGCTGCTACACCACAACGGGCAGGACTAA
- Protein Sequence
- MIEIVVFGIDSPLGLFPPGMDKMYPLMDVEHRAPPLDSQLFTNVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLDALGMHSGNNNNNHPPGKHHDKDEHGGGQRPASSEPDIASSPMFNPFTQGFYPEFPPGFPMPLNMLHLLPPGDKTRELYQAMPMALDSLANVAKEEDCKSDRSKENSADEEGDAYRAPHAHAPQPPDSRALLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115635;
- 90% Identity
- iTF_00657066; iTF_01245859; iTF_00462315; iTF_01135685; iTF_00156177; iTF_01134712; iTF_00325306; iTF_00155230; iTF_00656013; iTF_00660232; iTF_00654163; iTF_00289550; iTF_01072367; iTF_00411348; iTF_00410211; iTF_00871220; iTF_00409205; iTF_00412443; iTF_00680444; iTF_00659383; iTF_00148408; iTF_00149301; iTF_00772800;
- 80% Identity
- -