Cros021661.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- lov
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000032.1:5250306-5256880[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.7e-19 1.6e-15 57.4 0.0 1 44 66 109 66 110 0.96
Sequence Information
- Coding Sequence
- ATGAATACTAGGCGGGTGTTCGGCATCGACTCCCCCCTGGGCCTGTTCCCCCCAGGCATGGACAAGATGTATCCCCTGATGGACGTGGAGCACCGAGCGCCGCCGCTCGACGCGCAACTATTCACAAACGTCAAAAAGAAATGGCGACCTAAGGGGCAGCACAGCGCGCCGCGCGGCGGCCCGCCCCGCTCGTGGACCAACGCGGAGCTGACCGAGGCACTCCAGCACGTGTGGAACAAAAAGATGACGACGAGCCAGGCGTCGCGCATCTTCGGCATCCCGTACAACTCGCTGCTGATGTACGTGCGCGGCAAATACGGCAAGAGTCTGAAGCTGGAGCAGCTCCGGAAGGACTGCATCGGCGGGCCGCTCGACGGGCTCGGCATGCACTCgggaaacaacaacaacaaccacCCGCCCGGCAAGCACGACAAGGACGAGCACGCGGCGCAGCGGCCCGCCAGCTCGGAGCCCGACATCGCCTCCAGCCCCATGTTCAACCCGTTCACGCAAGGCTTCTACCCCGAGTTCCCGCCCGGCTTCCCCATGCCGCTCAACATGCTGCACTTACTGCCGCCGGGAGACAAAGCGCGCGAGCTGTATCAGGCCATGCCGATGGCGCTGGACTCACTCGCGCAGGTGGCTAAAGAGGAAGACTGTAAGAGCGACCGCTCCAAGGAGAACTCGGCCGACGAGGAGGGCGAGGCGTatcgcgcgccgccgccactGCAGCCGCACCCGCCCGACGCGCACCGCGCGCTGCTGCACCACAACGGACAGGACTAG
- Protein Sequence
- MNTRRVFGIDSPLGLFPPGMDKMYPLMDVEHRAPPLDAQLFTNVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLDGLGMHSGNNNNNHPPGKHDKDEHAAQRPASSEPDIASSPMFNPFTQGFYPEFPPGFPMPLNMLHLLPPGDKARELYQAMPMALDSLAQVAKEEDCKSDRSKENSADEEGEAYRAPPPLQPHPPDAHRALLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115635;
- 90% Identity
- iTF_00658281;
- 80% Identity
- -