Ebru052158.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977953.1:25034290-25037975[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.46 5.8e+03 -0.5 0.1 8 21 113 126 108 130 0.85 2 8 0.0019 23 7.2 0.5 11 45 259 294 255 302 0.82 3 8 0.41 5.2e+03 -0.3 0.1 21 45 298 322 294 325 0.84 4 8 0.0051 64 5.8 0.0 21 45 326 350 319 354 0.90 5 8 0.0073 92 5.3 0.0 21 45 354 378 350 381 0.90 6 8 0.0038 47 6.2 0.1 21 45 382 406 378 413 0.89 7 8 0.063 7.8e+02 2.3 0.0 21 44 410 433 406 436 0.91 8 8 5.6e-05 0.69 12.1 0.2 21 49 438 466 434 471 0.90
Sequence Information
- Coding Sequence
- ATGTCACTAGAGACATTGTGTGTGAAGACTGAGGCAGAGGAGGCATGTGTGAAAGAGGACGATGAGGCCGGGGCACATGTAAAGAGGGAGGTGGAGTGTGAGGACCGATCAGCCTTGTGCAAGCTGTACGCGGGCCACCAGGTCAAGGATGAGCTCGTGCTGGGCCCCGTGGAGTATCACCGGCCTAGTGTGCTCTCCTCAGTTCCAGCGGCTCGTCCCTTGGCTGgcgggcgcgcgtgctcggtCAGGCTGGAGCGGCTGCCGGCGCACGCGGGGCTCGGGCCGGGCGCGGCGCCGCGACCACACACGGaCCAAGCTCAACTAGCTTATAAAAATGAACCACCGAAAACAAACAAACGCCAAGCGCGAGTTCAAGAGAagaaagaaagtagagaaaaacgTAGTCTAGTAGAAAAACTTAACGAACCATCTACATCCCTTCAAGTGGAGTCACCAATGAACACGGACATACAAGAGGTTCCTCCTGGAGAACCCGCCGTCAATATATTCACTGGCAAAACAGACTCGACTGCGACAAACTTCAAATGCGACCTGTGTGGCAAGGGTTTCGATATAAAGTCGGACTTAAAGAAACACATACAAACACACGAGCTGTTGAAAAAGAGTACGAGTCTAAAAGCCAGCAAGGATTTCACGTGCAAGAAATGCAGTTGTACATTTGAGACTAAACTGCTTCTAGTGCAGCACGCGAAGAGCCGGCATGCCGTGGTATATTTCACTTGCTCCGAATGTGAGTACATGACTTGTTACAAAGGAACTTTAAAGCGACATTTAAGGACTCACACTGAAGAGCGGCCATTTAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCAGAGCAGTGCATTAAAACATCACCTGAGAACCCACACGGGAGAGCGGCCATTcaaatgtacccagtgtagctaCGCGTTTACCGAGAGTGGTTCTTTACAAACccacctgagaacacacactggagagAAGCCATTTAAATGTAGCCAGTGTAGCTCTACGTTTGCCCAGAGCGGTTCTTTACAAAAacacctgagaacacacactggagagAAACCATTTAAATGTAGCCAGTGTAGCTCTACGTTTGCCCAGAGCGGTTCTTTACATAAacacctgagaacacacactggagagAAACCATTTAAATGTAGCCAGTGTAGCTCTGCGTTTGCCCAGAGCAGTGCTTTACAAAAACACCTGAGGACACACACGGGAGAGCGGCCATttaaatgtacccagtgtagctccgCGTTTGCCCAGAGCGGTGGTTTGCAAGATCACCTGTGGACACACACTGGAGAGAAACCGTTTGAGTGCAACATATGCGAGTACAGGACTACTACGTCAAGTAATCTAAATAGGCATCTACTGAGCAGGCACTCGGGCCAAAAGCCGTACGGTTGCGACACTTGCAGTTACAGGGGTGCCACTAGAGAACATTTATCAAAACATATGAAAAGCCATCAAAAGCGAGCTAAGATGCTCTAG
- Protein Sequence
- MSLETLCVKTEAEEACVKEDDEAGAHVKREVECEDRSALCKLYAGHQVKDELVLGPVEYHRPSVLSSVPAARPLAGGRACSVRLERLPAHAGLGPGAAPRPHTDQAQLAYKNEPPKTNKRQARVQEKKESREKRSLVEKLNEPSTSLQVESPMNTDIQEVPPGEPAVNIFTGKTDSTATNFKCDLCGKGFDIKSDLKKHIQTHELLKKSTSLKASKDFTCKKCSCTFETKLLLVQHAKSRHAVVYFTCSECEYMTCYKGTLKRHLRTHTEERPFKCSQCSSAFAQSSALKHHLRTHTGERPFKCTQCSYAFTESGSLQTHLRTHTGEKPFKCSQCSSTFAQSGSLQKHLRTHTGEKPFKCSQCSSTFAQSGSLHKHLRTHTGEKPFKCSQCSSAFAQSSALQKHLRTHTGERPFKCTQCSSAFAQSGGLQDHLWTHTGEKPFECNICEYRTTTSSNLNRHLLSRHSGQKPYGCDTCSYRGATREHLSKHMKSHQKRAKML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657508;
- 90% Identity
- iTF_00657508;
- 80% Identity
- iTF_00657508;