Ebru052158.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia brunnichana
Gene Symbol
-
Assembly
GCA_963854355.1
Location
OY977953.1:25034290-25037975[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 5.6e-07 7.1e-05 25.0 0.6 1 23 181 203 181 203 0.99
2 11 0.018 2.3 10.8 4.2 1 23 218 241 218 241 0.97
3 11 0.00019 0.024 17.1 4.5 1 23 246 268 246 268 0.99
4 11 1.7e-05 0.0022 20.3 2.5 1 23 274 296 274 296 0.99
5 11 6.4e-06 0.00082 21.7 1.5 1 23 302 324 302 324 0.99
6 11 6.6e-06 0.00084 21.6 1.8 1 23 330 352 330 352 0.99
7 11 7.1e-05 0.0091 18.4 3.7 1 23 358 380 358 380 0.99
8 11 3.9e-06 0.0005 22.3 1.0 1 23 386 408 386 408 0.99
9 11 0.0089 1.1 11.8 0.2 1 20 414 433 414 436 0.92
10 11 6.4e-06 0.00081 21.7 1.2 1 23 442 465 442 465 0.97
11 11 0.0061 0.77 12.3 1.9 3 23 473 493 471 493 0.97

Sequence Information

Coding Sequence
ATGTCACTAGAGACATTGTGTGTGAAGACTGAGGCAGAGGAGGCATGTGTGAAAGAGGACGATGAGGCCGGGGCACATGTAAAGAGGGAGGTGGAGTGTGAGGACCGATCAGCCTTGTGCAAGCTGTACGCGGGCCACCAGGTCAAGGATGAGCTCGTGCTGGGCCCCGTGGAGTATCACCGGCCTAGTGTGCTCTCCTCAGTTCCAGCGGCTCGTCCCTTGGCTGgcgggcgcgcgtgctcggtCAGGCTGGAGCGGCTGCCGGCGCACGCGGGGCTCGGGCCGGGCGCGGCGCCGCGACCACACACGGaCCAAGCTCAACTAGCTTATAAAAATGAACCACCGAAAACAAACAAACGCCAAGCGCGAGTTCAAGAGAagaaagaaagtagagaaaaacgTAGTCTAGTAGAAAAACTTAACGAACCATCTACATCCCTTCAAGTGGAGTCACCAATGAACACGGACATACAAGAGGTTCCTCCTGGAGAACCCGCCGTCAATATATTCACTGGCAAAACAGACTCGACTGCGACAAACTTCAAATGCGACCTGTGTGGCAAGGGTTTCGATATAAAGTCGGACTTAAAGAAACACATACAAACACACGAGCTGTTGAAAAAGAGTACGAGTCTAAAAGCCAGCAAGGATTTCACGTGCAAGAAATGCAGTTGTACATTTGAGACTAAACTGCTTCTAGTGCAGCACGCGAAGAGCCGGCATGCCGTGGTATATTTCACTTGCTCCGAATGTGAGTACATGACTTGTTACAAAGGAACTTTAAAGCGACATTTAAGGACTCACACTGAAGAGCGGCCATTTAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCAGAGCAGTGCATTAAAACATCACCTGAGAACCCACACGGGAGAGCGGCCATTcaaatgtacccagtgtagctaCGCGTTTACCGAGAGTGGTTCTTTACAAACccacctgagaacacacactggagagAAGCCATTTAAATGTAGCCAGTGTAGCTCTACGTTTGCCCAGAGCGGTTCTTTACAAAAacacctgagaacacacactggagagAAACCATTTAAATGTAGCCAGTGTAGCTCTACGTTTGCCCAGAGCGGTTCTTTACATAAacacctgagaacacacactggagagAAACCATTTAAATGTAGCCAGTGTAGCTCTGCGTTTGCCCAGAGCAGTGCTTTACAAAAACACCTGAGGACACACACGGGAGAGCGGCCATttaaatgtacccagtgtagctccgCGTTTGCCCAGAGCGGTGGTTTGCAAGATCACCTGTGGACACACACTGGAGAGAAACCGTTTGAGTGCAACATATGCGAGTACAGGACTACTACGTCAAGTAATCTAAATAGGCATCTACTGAGCAGGCACTCGGGCCAAAAGCCGTACGGTTGCGACACTTGCAGTTACAGGGGTGCCACTAGAGAACATTTATCAAAACATATGAAAAGCCATCAAAAGCGAGCTAAGATGCTCTAG
Protein Sequence
MSLETLCVKTEAEEACVKEDDEAGAHVKREVECEDRSALCKLYAGHQVKDELVLGPVEYHRPSVLSSVPAARPLAGGRACSVRLERLPAHAGLGPGAAPRPHTDQAQLAYKNEPPKTNKRQARVQEKKESREKRSLVEKLNEPSTSLQVESPMNTDIQEVPPGEPAVNIFTGKTDSTATNFKCDLCGKGFDIKSDLKKHIQTHELLKKSTSLKASKDFTCKKCSCTFETKLLLVQHAKSRHAVVYFTCSECEYMTCYKGTLKRHLRTHTEERPFKCSQCSSAFAQSSALKHHLRTHTGERPFKCTQCSYAFTESGSLQTHLRTHTGEKPFKCSQCSSTFAQSGSLQKHLRTHTGEKPFKCSQCSSTFAQSGSLHKHLRTHTGEKPFKCSQCSSAFAQSSALQKHLRTHTGERPFKCTQCSSAFAQSGGLQDHLWTHTGEKPFECNICEYRTTTSSNLNRHLLSRHSGQKPYGCDTCSYRGATREHLSKHMKSHQKRAKML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00658018;
90% Identity
iTF_00658018;
80% Identity
iTF_00658018;