Ebil035974.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000617.1:245765-250416[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.013 1.3e+02 4.0 0.1 18 52 67 101 63 103 0.86 2 10 0.033 3.3e+02 2.6 0.1 21 43 98 120 96 124 0.90 3 10 1.6e-05 0.16 13.2 0.1 18 43 122 148 117 157 0.85 4 10 0.019 1.9e+02 3.4 0.1 21 44 154 177 151 185 0.86 5 10 0.17 1.7e+03 0.3 0.2 21 43 182 204 171 208 0.77 6 10 0.0013 13 7.1 0.1 18 47 206 236 201 241 0.80 7 10 0.0071 71 4.8 0.1 21 46 238 263 234 271 0.84 8 10 0.33 3.3e+03 -0.6 0.1 21 43 266 288 261 294 0.82 9 10 0.00017 1.7 10.0 0.0 21 46 322 347 314 354 0.84 10 10 0.018 1.8e+02 3.5 0.0 23 46 352 375 349 377 0.87
Sequence Information
- Coding Sequence
- ATGTGCAAAAGACAAAATATCCAAAGGACTAATTCAGATGTCAAGTTGGAATCAGAGTCGGAAGAATATGTGCAGGAGGAGTGCGAGGGCGAGAGCGAGAACGCAGGCTCGTGCGGAAGCGAGACGGAGCAGCAGGAGCGACCTTCGGAAACACGCTGTTGGCCTACCCTTACCATCGGGCCGATAGGAGCCGGGACACGGGCCGCGCACACCGACCCCACCTCTTGCGCAGTCTGCGCCAAAAAGTTCAAGAGAGCGAGCGTGCTGAAGGTCCACATGCGACTCCACACGGGAGAGAAACCGTTCTCCTGCAACATGTGCCAGAAACGATTCAACCAACTGATCCATTTGAAGAGACACGAGCAAGCTCACAGCGAACAAAAAGCTTTTACGTGCCCGATATGCGAAAAACAGTTCTCGCAGCCGAGTGACTTGAAGAGACATGGAATAATTCACACTGGAGAGAAACCGTATAAATGTGATATCTGTCATAAAAGATTTACACAGGTGGGCTCATTGAAGACGCATGCACGCGTCCATACTGGAGAAAGACCTTACAGCTGTGAAATGTGTCCGAAGCGATTCGCGCAACAGCACCAGTTGAAGGTACACGAACGTAGTCATACTGGAGAAAAACCATACAGTTGTGAAATCTGTGACAAGCGGTTTACAAAAGCGGTCGACTTGCAGAGACACGTGCGTGTGCACACTGGGGAGAAACCGTTCTCCTGTGCCATATGCGAGAAGAAGTTTTCAGATGTTTTGTATTTAAGACGGCATGAACGAGTTCACACTGGGGAAAAGCCGTACGCGTGCGAAAGGTGTAAAAGAGAGTTTACAGAATGGGGCAGTTTGAGGAGACACGAGCGGGTTCATACTGGAGACCGTCCTTACCCCTGCCAAACATGCGGAAAGCGTTTCAAAATACTACACTCTTTAAAAATGCACAACCGAATACACACTGGTGAGAAACCCCATTCCTGTCCTATTTGTGAGAAGAAGTTCATTGACTCGAACAGCATGAGGAAGCACGAGCGGATACACACAGGCCTAAAACCTTTCACATGCGATATATGCTTAAAGGACTTTACTGAAATGGGTAGTTTGAGGAAACATTCTCGACTTCACATGTGA
- Protein Sequence
- MCKRQNIQRTNSDVKLESESEEYVQEECEGESENAGSCGSETEQQERPSETRCWPTLTIGPIGAGTRAAHTDPTSCAVCAKKFKRASVLKVHMRLHTGEKPFSCNMCQKRFNQLIHLKRHEQAHSEQKAFTCPICEKQFSQPSDLKRHGIIHTGEKPYKCDICHKRFTQVGSLKTHARVHTGERPYSCEMCPKRFAQQHQLKVHERSHTGEKPYSCEICDKRFTKAVDLQRHVRVHTGEKPFSCAICEKKFSDVLYLRRHERVHTGEKPYACERCKREFTEWGSLRRHERVHTGDRPYPCQTCGKRFKILHSLKMHNRIHTGEKPHSCPICEKKFIDSNSMRKHERIHTGLKPFTCDICLKDFTEMGSLRKHSRLHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658662;
- 90% Identity
- iTF_00658015;
- 80% Identity
- iTF_00656358;