Efoe028879.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963556455.1
- Location
- OY747111.1:19636305-19637675[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 7.9e-05 0.84 11.0 0.1 21 51 167 197 161 199 0.90 2 7 0.0015 16 6.9 0.1 21 45 227 251 222 257 0.89 3 7 0.019 2e+02 3.4 0.0 20 44 254 278 251 282 0.89 4 7 0.00086 9.2 7.7 0.0 22 47 284 309 280 313 0.88 5 7 0.52 5.5e+03 -1.2 0.0 27 53 317 343 315 344 0.77 6 7 0.0032 35 5.8 0.1 6 48 349 391 346 394 0.89 7 7 2 2.2e+04 -3.1 0.1 5 16 443 454 440 454 0.79
Sequence Information
- Coding Sequence
- ATGAACCAAAAAATTTGTCGTTTGTGCTGCGAAAACGAAGGCGCTTCCTATATATATAGCGATGAAAGCGGCGTGTCAATTTGCGCTAAAATATTACATTGTTGCGCTAACTTAAAAGTTTCCGAGGGCGACGGGCTGCCGACGCATATTTGTGGCTCTTGCGAGGCCGAGCTGACCGCCTCCTACAACTTCGTTCTGAAATGCGAAGCCACGGACCAGATATTACGCTGTAGAGCTTCTGAAATCGATGATAACGCCGATGATTGCAAGTTAAAAGTCGAAGTTAAACAAGAAAACTGTTCTGACCATTACGAAGACGCAGATGAAACAGTATCTTATCCCTATCTTGATTATAATGaagttaaaaaagaaattaaaccGAAACGAGCCTACAAGAAGAGAGCGCGACTCAAAGGCAAAGGTTCTTGCAAGTGCAAGGAGTGTGGACGTGTTTGCGCTAGTCAGTCTGCACTACTCATACACAACAGGGTACATTCCGGAGAAAGACCCTACCAGTGCCCTTCCTGCGACAAGAAATATGCAGATAGAGGTGGCCTTAAAAGACACATTGAACGAAACCATTTTGGAAAAATGAGGGAACGTAAATTCATGTGTGAAAATTGTGGTAAAGCATTTTATACAAAAACTGATGTAGCTGTTCATATGAGGACTCATACGGGAGAAACTCCTTATGCTTGTACCATCTGCCCATCTAAATTCACACAGAGCAGTGCTATGCTACGTCACATCAAAACACATTCATCTGAGAAGTCTCACGGCTGCCCAACTTGCGGTAAAATGTTtggcacaaaagaaaaactgaAACGACACATCTTGACACATTCCACAGAAAAACAATACAGCTGTTCACTCTGCAATTccctatttaaatataaaaacaatctaAAGAAACATCTTAAATTACATGCTGAGCCAAACCGATTTGTTTGCAATTACTGTGGCCGCACTTTCAACGTAAAAGGCAACCTTAAACTACACATTAAAACGCAGCATTCAGAGAAGTCTGGCTTCTGCACAATCTGTGCCAAAAACGTGCCAAACATGGACACGCACATGTGGCGTCACACAGGAGAGAGGCCATTGAAATGTGAGCTTTGCACAAGCAGCTTCTTCGAGCTGAAAGCCCTTGCCCATCACATGAGTTTTAGACATAAGAATACCGATAAATATAAGTGTCCGATAGAAGGGTGTGGTATGACGTTTCCTTCCCGGCCGATGCTTGCCTTCCACAACGCCAAACTTCATGACACTCGCATCCCGTTTCCCTGCGACCGGTGTTCTAGAGGTTTCTACAGAAAAAATGATCTGGCGAGACATAAAATAGGAACGCATAAGGAAAGACTGACATAG
- Protein Sequence
- MNQKICRLCCENEGASYIYSDESGVSICAKILHCCANLKVSEGDGLPTHICGSCEAELTASYNFVLKCEATDQILRCRASEIDDNADDCKLKVEVKQENCSDHYEDADETVSYPYLDYNEVKKEIKPKRAYKKRARLKGKGSCKCKECGRVCASQSALLIHNRVHSGERPYQCPSCDKKYADRGGLKRHIERNHFGKMRERKFMCENCGKAFYTKTDVAVHMRTHTGETPYACTICPSKFTQSSAMLRHIKTHSSEKSHGCPTCGKMFGTKEKLKRHILTHSTEKQYSCSLCNSLFKYKNNLKKHLKLHAEPNRFVCNYCGRTFNVKGNLKLHIKTQHSEKSGFCTICAKNVPNMDTHMWRHTGERPLKCELCTSSFFELKALAHHMSFRHKNTDKYKCPIEGCGMTFPSRPMLAFHNAKLHDTRIPFPCDRCSRGFYRKNDLARHKIGTHKERLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00659664;
- 90% Identity
- iTF_00654544; iTF_00657520; iTF_00656393; iTF_00656392; iTF_00658698; iTF_00660545; iTF_00289907; iTF_01073244; iTF_01072815; iTF_00871587; iTF_01134046;
- 80% Identity
- iTF_00654544;